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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1159.4 nTPM
HPA Brain:322.1 nTPM
GTEx:1159.4 nTPM
FANTOM5:324.8 Scaled Tags Per Million
Pig:0.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.1
Sample id Sample description nTPM
Amygdala
nTPM: 322.1
2695 Female, age 67, right hemisphere 453.6
2514 Male, age 75, right hemisphere 304.1
2814 Male, age 76, right hemisphere 292.7
2517 Female, age 94, left hemisphere 291.6
1987 Female, age 91, left hemisphere 268.7
Basal amygdala
nTPM: 270.0
2827 Female, age 67, right hemisphere 376.2
2609 Male, age 75, right hemisphere 315.0
2685 Female, age 94, left hemisphere 261.4
2110 Male, age 80, left hemisphere 253.5
2243 Female, age 91, right hemisphere 212.3
1955 Male, age 76, both hemispheres 201.4
Central amygdala
nTPM: 296.7
2826 Female, age 94, left hemisphere 500.4
2515 Male, age 75, right hemisphere 302.3
1905 Male, age 76, both hemispheres 262.0
2239 Male, age 80, left hemisphere 214.2
2701 Female, age 91, right hemisphere 204.9
Corticomedial amygdala
nTPM: 231.8
2428 Male, age 75, right hemisphere 279.0
2829 Male, age 80, left hemisphere 254.6
2535 Female, age 67, right hemisphere 239.4
2240 Male, age 76, both hemispheres 218.5
2429 Female, age 94, left hemisphere 205.9
2242 Female, age 91, right hemisphere 193.2
Lateral amygdala
nTPM: 320.2
2830 Female, age 67, right hemisphere 497.3
2516 Male, age 75, right hemisphere 388.9
2534 Female, age 94, left hemisphere 332.4
2256 Male, age 80, left hemisphere 255.0
1883 Male, age 76, both hemispheres 239.0
2255 Female, age 91, right hemisphere 208.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1159.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1159.4
Samples: 152

Max nTPM: 3505.1
Min nTPM: 379.0
Std nTPM: 504.5
Median nTPM: 1061.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3505.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3262.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2895.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2720.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2534.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2360.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2339.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2258.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2047.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1966.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1950.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1838.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1828.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1771.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1769.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1657.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1651.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1645.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1635.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1601.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1567.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1564.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1560.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1543.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1487.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1478.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1461.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1446.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1420.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1419.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1412.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1409.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1404.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1398.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1395.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1393.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1392.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1376.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1362.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1340.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1312.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1310.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1303.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1302.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1293.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1274.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1270.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1262.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1251.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1212.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1188.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1188.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1187.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1173.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1161.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1159.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1151.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1150.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1149.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1147.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1138.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1134.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1132.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1121.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1120.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1112.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1111.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1095.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1092.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1091.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1091.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1090.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1075.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1074.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1066.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1062.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1059.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1056.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1054.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1042.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1038.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1038.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1035.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1009.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1002.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1002.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1000.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1000.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 997.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 995.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 979.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 967.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 966.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 950.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 944.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 939.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 925.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 923.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 900.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 899.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 896.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 893.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 886.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 884.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 883.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 878.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 869.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 867.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 862.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 852.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 849.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 832.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 832.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 820.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 808.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 799.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 798.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 790.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 780.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 778.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 773.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 772.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 770.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 768.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 767.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 759.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 756.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 746.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 727.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 715.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 705.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 695.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 695.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 688.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 679.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 676.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 668.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 667.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 664.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 660.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 657.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 644.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 640.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 625.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 615.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 614.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 603.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 601.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 588.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 586.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 579.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 379.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

324.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 324.8
FF:10151-102I7 76 years, female 324.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Pig sample Sample description nTPM
Amygdala
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.3
Sample C Male 0.4
Sample D Male 0.7

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