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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:845.3 nTPM
HPA Brain:344.1 nTPM
GTEx:845.3 nTPM
FANTOM5:0.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.1
Sample id Sample description nTPM
Amygdala
nTPM: 344.1
2695 Female, age 67, right hemisphere 752.0
1987 Female, age 91, left hemisphere 344.9
2514 Male, age 75, right hemisphere 264.7
2517 Female, age 94, left hemisphere 210.3
2814 Male, age 76, right hemisphere 148.8
Basal amygdala
nTPM: 255.1
2827 Female, age 67, right hemisphere 464.8
2609 Male, age 75, right hemisphere 410.0
2110 Male, age 80, left hemisphere 291.0
1955 Male, age 76, both hemispheres 162.5
2243 Female, age 91, right hemisphere 114.4
2685 Female, age 94, left hemisphere 88.2
Central amygdala
nTPM: 208.5
2826 Female, age 94, left hemisphere 268.2
2515 Male, age 75, right hemisphere 260.1
2239 Male, age 80, left hemisphere 222.4
1905 Male, age 76, both hemispheres 159.7
2701 Female, age 91, right hemisphere 132.0
Corticomedial amygdala
nTPM: 167.1
2535 Female, age 67, right hemisphere 252.0
2428 Male, age 75, right hemisphere 186.4
2429 Female, age 94, left hemisphere 185.7
2829 Male, age 80, left hemisphere 160.1
2240 Male, age 76, both hemispheres 126.7
2242 Female, age 91, right hemisphere 92.0
Lateral amygdala
nTPM: 334.5
2516 Male, age 75, right hemisphere 864.2
2830 Female, age 67, right hemisphere 409.8
2534 Female, age 94, left hemisphere 280.1
2256 Male, age 80, left hemisphere 182.1
1883 Male, age 76, both hemispheres 136.3
2255 Female, age 91, right hemisphere 134.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

845.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 845.3
Samples: 152

Max nTPM: 4841.8
Min nTPM: 70.0
Std nTPM: 906.5
Median nTPM: 517.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 4841.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4074.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 3655.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3567.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3554.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3453.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3353.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3195.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 3041.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2826.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2763.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2568.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2508.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2244.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2225.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1941.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1909.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1844.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1800.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1777.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1629.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1608.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1482.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1341.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1310.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1299.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1288.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1287.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1225.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1218.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1139.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1102.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1093.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1082.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1075.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1072.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1060.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1042.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1033.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1014.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 992.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 991.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 989.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 977.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 921.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 913.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 864.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 793.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 788.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 783.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 762.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 742.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 730.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 722.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 717.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 711.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 706.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 705.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 658.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 638.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 632.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 631.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 628.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 626.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 622.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 621.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 613.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 613.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 604.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 586.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 566.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 565.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 551.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 530.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 524.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 519.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 515.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 508.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 507.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 506.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 495.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 486.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 470.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 440.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 439.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 427.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 427.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 421.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 416.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 410.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 399.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 391.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 388.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 387.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 377.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 367.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 363.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 363.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 361.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 357.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 354.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 353.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 344.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 329.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 324.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 322.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 318.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 310.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 307.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 305.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 292.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 290.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 277.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 267.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 262.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 261.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 257.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 247.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 246.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 235.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 234.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 225.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 224.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 223.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 218.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 217.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 209.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 209.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 206.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 196.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 195.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 190.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 186.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 181.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 177.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 176.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 162.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 160.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 156.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 138.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 138.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 137.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 134.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 130.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 127.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 115.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 112.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 104.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 98.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 91.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 88.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 70.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 0.0
FF:10151-102I7 76 years, female 0.0

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