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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:963.5 nTPM
HPA Brain:679.6 nTPM
GTEx:963.5 nTPM
FANTOM5:0.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

679.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 176.0
2565 Male, age 75, midline 245.8
1981 Female, age 72, midline 205.7
2816 Male, age 47, midline 160.7
2194 Female, age 79, both hemispheres 137.3
2048 Male, age 55, midline 130.7
Cervical spinal cord, dorsal horn
nTPM: 131.7
2297 Male, age 75, both hemispheres 187.8
2173 Female, age 72, unknown 177.4
2721 Male, age 90, both hemispheres 151.8
2296 Male, age 66, both hemispheres 101.2
1877 Male, age 55, unknown 91.2
2069 Male, age 47, both hemispheres 80.6
Cervical spinal cord, ventral horn
nTPM: 679.6
2098 Female, age 72, unknown 1341.0
2480 Male, age 75, both hemispheres 1147.2
2809 Male, age 90, both hemispheres 545.7
2820 Female, age 79, both hemispheres 414.1
2295 Male, age 66, both hemispheres 362.1
2068 Male, age 55, unknown 267.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

963.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 963.5
Samples: 159

Max nTPM: 6129.6
Min nTPM: 50.8
Std nTPM: 1074.5
Median nTPM: 640.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 6129.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 5917.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 5130.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 4759.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 4325.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 3960.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 3805.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 3780.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 3310.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2855.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2589.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2428.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 2345.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2042.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2001.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1979.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1927.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1823.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1750.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1743.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1705.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1626.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1601.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1565.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1540.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1526.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1512.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1505.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1472.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1469.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1424.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1384.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1320.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1314.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1296.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1286.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1275.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1272.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1271.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1258.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1241.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1180.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1164.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1123.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1118.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1094.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1083.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1082.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1070.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1066.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1062.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1032.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1023.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1012.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 979.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 953.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 948.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 893.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 878.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 875.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 875.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 857.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 824.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 822.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 821.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 815.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 765.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 752.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 747.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 739.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 716.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 706.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 704.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 700.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 697.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 676.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 675.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 657.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 645.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 640.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 639.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 627.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 616.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 610.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 604.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 584.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 579.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 536.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 518.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 518.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 514.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 510.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 501.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 481.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 481.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 469.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 465.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 454.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 450.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 423.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 421.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 409.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 407.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 403.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 394.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 390.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 383.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 381.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 380.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 372.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 350.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 336.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 335.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 329.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 329.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 329.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 324.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 283.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 282.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 279.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 278.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 277.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 277.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 275.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 263.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 262.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 257.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 223.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 221.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 217.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 213.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 212.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 204.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 190.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 182.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 181.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 179.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 177.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 175.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 167.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 167.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 164.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 156.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 154.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 153.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 139.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 130.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 125.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 121.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 112.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 109.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 101.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 81.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 80.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 72.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 61.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 52.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 52.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 50.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 0.0
FF:10181-103D1 60 years, female 0.0
FF:10159-103A6 76 years, female 0.0

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