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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:402.7 nTPM
FANTOM5:680.1 Scaled Tags Per Million
Pig:125.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040520
Glial cells High
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

402.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 402.7
Samples: 246

Max nTPM: 1158.3
Min nTPM: 134.9
Std nTPM: 174.5
Median nTPM: 357.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1158.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1001.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 987.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 966.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 847.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 841.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 833.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 819.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 798.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 786.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 766.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 739.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 723.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 722.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 705.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 705.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 695.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 692.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 680.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 678.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 671.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 631.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 619.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 614.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 613.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 613.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 612.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 612.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 606.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 604.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 603.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 600.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 597.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 592.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 587.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 587.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 585.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 581.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 578.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 572.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 565.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 555.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 554.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 552.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 550.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 547.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 546.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 545.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 536.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 535.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 535.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 528.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 521.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 515.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 512.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 511.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 507.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 504.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 501.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 498.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 497.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 497.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 494.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 491.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 491.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 490.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 490.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 489.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 486.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 485.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 482.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 476.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 473.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 471.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 471.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 460.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 459.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 458.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 455.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 454.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 454.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 453.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 453.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 452.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 441.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 439.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 436.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 435.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 432.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 427.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 425.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 422.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 422.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 417.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 414.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 414.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 412.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 411.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 410.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 406.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 405.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 403.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 401.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 398.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 398.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 398.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 391.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 389.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 387.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 385.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 380.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 380.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 379.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 378.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 376.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 376.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 375.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 372.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 371.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 369.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 367.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 361.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 358.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 355.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 352.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 351.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 350.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 349.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 347.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 346.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 346.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 344.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 343.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 339.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 337.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 336.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 336.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 335.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 335.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 334.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 334.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 334.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 332.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 332.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 329.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 329.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 328.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 328.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 328.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 325.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 325.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 324.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 324.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 324.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 322.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 321.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 321.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 320.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 318.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 317.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 316.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 315.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 310.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 310.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 307.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 306.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 305.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 304.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 304.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 304.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 302.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 302.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 300.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 297.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 293.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 293.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 290.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 289.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 289.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 288.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 285.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 284.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 281.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 279.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 278.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 276.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 274.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 272.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 271.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 271.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 271.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 268.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 263.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 262.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 258.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 256.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 256.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 255.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 253.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 253.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 251.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 249.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 247.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 246.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 245.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 242.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 242.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 239.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 235.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 234.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 232.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 230.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 229.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 227.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 227.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 224.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 222.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 220.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 219.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 218.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 217.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 217.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 214.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 212.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 211.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 210.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 209.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 205.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 204.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 201.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 196.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 190.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 189.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 188.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 186.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 182.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 178.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 170.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 168.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 157.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 153.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 147.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 139.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 138.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 136.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 134.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

680.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 680.1
FF:10164-103B2 76 years, female 680.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.5
Pig sample Sample description nTPM
Caudate
nTPM: 125.5
Samples: 4

Max nTPM: 151.3
Min nTPM: 106.0
Sample A Female 118.0
Sample B Female 106.0
Sample C Male 151.3
Sample D Male 126.7

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