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S100A13
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  • S100A13
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:377.7 nTPM
HPA Brain:108.8 nTPM
GTEx:377.7 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:54.9 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.8
Sample id Sample description nTPM
Amygdala
nTPM: 108.8
2695 Female, age 67, right hemisphere 138.2
2814 Male, age 76, right hemisphere 118.3
2514 Male, age 75, right hemisphere 114.8
1987 Female, age 91, left hemisphere 98.2
2517 Female, age 94, left hemisphere 74.3
Basal amygdala
nTPM: 91.1
2609 Male, age 75, right hemisphere 150.1
2243 Female, age 91, right hemisphere 100.1
2110 Male, age 80, left hemisphere 98.0
1955 Male, age 76, both hemispheres 95.8
2685 Female, age 94, left hemisphere 56.4
2827 Female, age 67, right hemisphere 46.2
Central amygdala
nTPM: 88.9
1905 Male, age 76, both hemispheres 123.7
2515 Male, age 75, right hemisphere 89.5
2239 Male, age 80, left hemisphere 89.3
2701 Female, age 91, right hemisphere 77.6
2826 Female, age 94, left hemisphere 64.5
Corticomedial amygdala
nTPM: 87.6
2428 Male, age 75, right hemisphere 110.1
2829 Male, age 80, left hemisphere 109.6
2242 Female, age 91, right hemisphere 93.5
2240 Male, age 76, both hemispheres 84.1
2429 Female, age 94, left hemisphere 83.2
2535 Female, age 67, right hemisphere 45.3
Lateral amygdala
nTPM: 84.2
2516 Male, age 75, right hemisphere 129.6
1883 Male, age 76, both hemispheres 92.9
2255 Female, age 91, right hemisphere 80.4
2256 Male, age 80, left hemisphere 76.3
2830 Female, age 67, right hemisphere 71.8
2534 Female, age 94, left hemisphere 54.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 377.7
Samples: 152

Max nTPM: 1666.9
Min nTPM: 72.6
Std nTPM: 225.2
Median nTPM: 326.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1666.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1232.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1173.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1109.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1047.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 873.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 796.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 695.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 682.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 675.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 672.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 655.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 632.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 631.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 626.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 620.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 619.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 605.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 592.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 584.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 567.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 563.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 557.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 556.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 550.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 545.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 544.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 538.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 515.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 510.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 510.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 494.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 484.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 481.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 480.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 470.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 460.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 449.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 436.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 430.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 422.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 421.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 420.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 418.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 412.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 405.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 404.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 404.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 398.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 396.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 395.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 394.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 392.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 388.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 385.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 384.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 383.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 381.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 377.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 375.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 373.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 361.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 361.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 360.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 359.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 358.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 355.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 354.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 343.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 342.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 339.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 338.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 329.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 329.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 327.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 326.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 326.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 325.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 324.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 322.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 318.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 317.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 315.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 314.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 309.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 309.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 307.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 303.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 299.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 298.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 293.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 293.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 292.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 292.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 291.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 290.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 289.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 289.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 289.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 286.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 280.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 275.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 273.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 268.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 267.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 266.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 264.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 259.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 254.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 251.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 250.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 241.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 237.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 237.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 236.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 235.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 234.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 229.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 228.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 226.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 225.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 224.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 211.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 210.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 205.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 201.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 195.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 195.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 194.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 183.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 182.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 179.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 177.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 167.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 165.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 162.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 161.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 160.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 159.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 159.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 152.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 149.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 148.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 146.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 144.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 143.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 130.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 122.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 114.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 89.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 83.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 72.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 43.9
FF:10151-102I7 76 years, female 43.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.8
Pig sample Sample description nTPM
Amygdala
nTPM: 16.8
Samples: 4

Max nTPM: 24.1
Min nTPM: 10.0
Sample A Female 16.2
Sample B Female 24.1
Sample C Male 16.9
Sample D Male 10.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 54.9
Samples: 4

Max nTPM: 62.8
Min nTPM: 47.2
Sample A Male 47.2
Sample B Male 47.9
Sample C Female 61.8
Sample D Female 62.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71735833 Antisense, RP_051010_03_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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