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S100A13
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:319.3 nTPM
HPA Brain:124.3 nTPM
GTEx:319.3 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:30.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 107.3
2048 Male, age 55, midline 142.4
1981 Female, age 72, midline 131.8
2816 Male, age 47, midline 94.1
2565 Male, age 75, midline 85.4
2194 Female, age 79, both hemispheres 82.7
Cervical spinal cord, dorsal horn
nTPM: 104.2
2173 Female, age 72, unknown 160.3
2296 Male, age 66, both hemispheres 142.0
1877 Male, age 55, unknown 109.6
2069 Male, age 47, both hemispheres 98.8
2297 Male, age 75, both hemispheres 59.0
2721 Male, age 90, both hemispheres 55.6
Cervical spinal cord, ventral horn
nTPM: 124.3
2098 Female, age 72, unknown 169.6
2809 Male, age 90, both hemispheres 148.0
2480 Male, age 75, both hemispheres 122.4
2295 Male, age 66, both hemispheres 117.2
2068 Male, age 55, unknown 112.8
2820 Female, age 79, both hemispheres 75.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 319.3
Samples: 159

Max nTPM: 618.4
Min nTPM: 86.3
Std nTPM: 109.2
Median nTPM: 310.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 618.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 611.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 581.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 574.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 572.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 553.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 539.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 528.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 528.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 524.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 509.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 504.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 493.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 487.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 474.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 467.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 458.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 455.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 451.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 451.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 450.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 439.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 438.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 438.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 434.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 428.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 426.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 419.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 413.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 407.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 406.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 406.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 400.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 398.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 398.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 396.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 389.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 385.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 383.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 382.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 380.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 380.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 377.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 368.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 368.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 367.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 366.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 365.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 363.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 363.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 362.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 361.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 360.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 359.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 351.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 347.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 346.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 344.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 340.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 339.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 338.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 337.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 335.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 334.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 329.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 328.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 328.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 328.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 326.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 326.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 321.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 319.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 318.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 317.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 317.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 316.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 314.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 312.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 311.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 310.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 310.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 309.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 309.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 307.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 305.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 305.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 305.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 304.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 303.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 302.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 299.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 299.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 295.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 294.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 290.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 289.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 288.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 286.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 284.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 278.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 277.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 274.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 272.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 271.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 263.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 263.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 262.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 259.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 252.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 252.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 251.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 251.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 250.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 250.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 248.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 247.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 242.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 241.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 239.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 238.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 238.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 236.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 235.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 235.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 235.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 232.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 232.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 225.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 225.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 225.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 223.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 222.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 222.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 218.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 215.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 206.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 205.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 205.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 202.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 201.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 200.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 191.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 188.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 181.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 174.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 171.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 163.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 160.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 156.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 155.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 151.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 149.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 149.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 145.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 136.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 128.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 113.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 109.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 86.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 62.9
FF:10181-103D1 60 years, female 79.1
FF:10159-103A6 76 years, female 46.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 22.4
Sample A Female 26.2
Sample B Female 29.8
Sample C Male 27.3
Sample D Male 22.4
Ventral spinal cord
nTPM: 30.5
Samples: 4

Max nTPM: 34.4
Min nTPM: 28.6
Sample A Female 28.6
Sample B Female 34.4
Sample C Male 30.1
Sample D Male 28.8

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