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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:377.3 nTPM
HPA Brain:1281.9 nTPM
GTEx:377.3 nTPM
FANTOM5:1067.6 Scaled Tags Per Million
Pig:510.9 nTPM
Mouse:1227.6 nTPM
Allen mouse:27.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1281.9
Sample id Sample description nTPM
Amygdala
nTPM: 1281.9
1987 Female, age 91, left hemisphere 1469.9
2814 Male, age 76, right hemisphere 1300.2
2517 Female, age 94, left hemisphere 1233.8
2514 Male, age 75, right hemisphere 1212.3
2695 Female, age 67, right hemisphere 1193.0
Basal amygdala
nTPM: 992.4
2110 Male, age 80, left hemisphere 1202.7
1955 Male, age 76, both hemispheres 1119.5
2243 Female, age 91, right hemisphere 1063.6
2609 Male, age 75, right hemisphere 1060.6
2685 Female, age 94, left hemisphere 1041.4
2827 Female, age 67, right hemisphere 466.3
Central amygdala
nTPM: 1160.0
2826 Female, age 94, left hemisphere 1258.2
2515 Male, age 75, right hemisphere 1251.9
1905 Male, age 76, both hemispheres 1247.9
2701 Female, age 91, right hemisphere 1027.1
2239 Male, age 80, left hemisphere 1015.0
Corticomedial amygdala
nTPM: 972.6
2829 Male, age 80, left hemisphere 1153.9
2428 Male, age 75, right hemisphere 1106.9
2242 Female, age 91, right hemisphere 1078.5
2429 Female, age 94, left hemisphere 1027.1
2240 Male, age 76, both hemispheres 985.1
2535 Female, age 67, right hemisphere 484.3
Lateral amygdala
nTPM: 977.8
1883 Male, age 76, both hemispheres 1201.9
2534 Female, age 94, left hemisphere 1165.3
2516 Male, age 75, right hemisphere 1024.6
2255 Female, age 91, right hemisphere 993.8
2256 Male, age 80, left hemisphere 961.0
2830 Female, age 67, right hemisphere 520.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 377.3
Samples: 152

Max nTPM: 856.3
Min nTPM: 126.8
Std nTPM: 127.6
Median nTPM: 366.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 856.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 790.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 703.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 685.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 633.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 614.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 600.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 587.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 586.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 581.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 574.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 563.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 556.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 554.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 547.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 547.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 544.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 540.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 532.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 530.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 529.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 527.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 520.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 519.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 504.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 499.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 489.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 485.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 485.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 478.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 478.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 475.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 470.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 467.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 459.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 459.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 453.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 448.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 447.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 443.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 440.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 437.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 436.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 433.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 429.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 429.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 427.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 427.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 413.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 413.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 410.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 409.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 407.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 404.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 397.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 397.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 396.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 395.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 394.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 393.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 391.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 389.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 386.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 384.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 384.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 381.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 380.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 380.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 375.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 374.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 374.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 374.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 372.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 368.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 366.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 366.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 365.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 365.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 364.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 363.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 362.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 362.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 360.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 353.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 353.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 352.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 352.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 348.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 346.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 345.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 340.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 335.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 333.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 329.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 325.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 324.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 318.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 317.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 314.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 312.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 312.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 308.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 307.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 304.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 302.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 302.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 301.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 300.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 298.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 297.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 296.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 295.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 292.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 292.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 289.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 288.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 287.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 283.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 283.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 281.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 274.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 273.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 267.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 266.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 264.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 259.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 252.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 249.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 249.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 248.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 247.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 247.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 244.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 243.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 234.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 232.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 231.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 230.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 227.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 223.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 220.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 219.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 211.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 188.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 181.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 177.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 177.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 174.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 146.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 139.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 131.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 126.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1067.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1067.6
FF:10151-102I7 76 years, female 1067.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

510.9
Pig sample Sample description nTPM
Amygdala
nTPM: 510.9
Samples: 4

Max nTPM: 652.8
Min nTPM: 412.7
Sample A Female 652.8
Sample B Female 412.7
Sample C Male 517.0
Sample D Male 461.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1227.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1227.6
Samples: 4

Max nTPM: 1302.2
Min nTPM: 1158.5
Sample A Male 1302.2
Sample B Male 1158.5
Sample C Female 1252.4
Sample D Female 1197.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.6
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 35.0
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 20.2
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 18.3

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