PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:1589.6 nTPM
FANTOM5:1208.7 Scaled Tags Per Million
Pig:890.9 nTPM
Mouse:985.1 nTPM
Allen mouse:14.3 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 1589.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 951.7
2090 Male, age 80, both hemispheres 1048.2
1984 Male, age 76, both hemispheres 1003.6
2188 Female, age 91, both hemispheres 938.6
2301 Female, age 85, both hemispheres 816.6
Area postrema
nTPM: 1483.3
2799 Male, age 61, both hemispheres 1955.1
2306 Male, age 80, both hemispheres 1268.4
2054 Male, age 76, both hemispheres 1226.3
Dorsal cochlear nucleus
nTPM: 1005.2
2370 Male, age 61, both hemispheres 1192.7
2058 Male, age 76, both hemispheres 1060.9
2187 Female, age 91, both hemispheres 1001.2
2802 Male, age 74, right hemisphere 929.0
2378 Male, age 80, both hemispheres 842.3
Dorsal medullary reticular nucleus
nTPM: 1089.6
2040 Female, age 85, both hemispheres 1398.5
2373 Male, age 61, both hemispheres 961.4
2088 Male, age 76, both hemispheres 909.1
Dorsal motor vagal complex
nTPM: 1172.2
2000 Male, age 74, unknown 1382.6
2797 Male, age 61, both hemispheres 1311.9
2813 Female, age 72, unknown 1270.1
2844 Male, age 55, unknown 1212.2
2643 Male, age 74, both hemispheres 1172.3
2133 Female, age 91, both hemispheres 1151.7
2185 Male, age 76, both hemispheres 1113.3
2807 Female, age 85, both hemispheres 763.7
Dorsal tegmental nucleus
nTPM: 1147.8
2358 Male, age 61, both hemispheres 1285.9
2083 Male, age 80, both hemispheres 1243.6
2326 Male, age 74, both hemispheres 1067.0
1936 Male, age 76, left hemisphere 994.8
Dorsolateral tegmental area
nTPM: 1412.5
2337 Male, age 61, both hemispheres 2277.3
2360 Male, age 74, both hemispheres 1407.0
2654 Male, age 80, both hemispheres 1179.4
2751 Female, age 85, both hemispheres 1147.2
2141 Male, age 76, both hemispheres 1051.6
Gigantocellular reticular nuclei, medullary
nTPM: 1094.1
2462 Male, age 74, both hemispheres 1295.1
1876 Female, age 85, both hemispheres 1226.5
2022 Male, age 76, right hemisphere 1169.3
2314 Male, age 61, both hemispheres 1132.1
2310 Male, age 80, both hemispheres 911.5
2387 Female, age 91, both hemispheres 829.9
Gigantocellular reticular nuclei, pars
nTPM: 1038.6
2168 Male, age 76, both hemispheres 1300.6
2084 Female, age 85, both hemispheres 1176.2
2336 Male, age 61, both hemispheres 1105.0
2706 Male, age 80, both hemispheres 817.2
2330 Male, age 80, both hemispheres 794.1
Inferior olive
nTPM: 1158.7
2563 Male, age 74, both hemispheres 1422.3
2178 Male, age 61, both hemispheres 1195.6
2085 Female, age 85, both hemispheres 1192.8
2379 Male, age 80, both hemispheres 1024.3
2628 Female, age 91, both hemispheres 958.6
Kolliker-Fuse nucleus
nTPM: 1246.3
2315 Male, age 76, right hemisphere 1595.7
2163 Male, age 80, both hemispheres 1245.7
2793 Female, age 91, left hemisphere 897.5
Lateral lemniscal nuclei
nTPM: 1142.3
2746 Female, age 85, left hemisphere 1468.9
2169 Male, age 76, both hemispheres 1288.0
2036 Male, age 80, both hemispheres 1256.1
2453 Male, age 74, right hemisphere 928.7
2320 Female, age 91, left hemisphere 769.6
Lateral medullary reticular nucleus
nTPM: 1317.5
2305 Male, age 74, both hemispheres 1809.4
2852 Male, age 80, both hemispheres 1440.9
2044 Male, age 76, both hemispheres 1294.3
2190 Female, age 85, both hemispheres 1185.8
2804 Female, age 91, both hemispheres 1102.8
2374 Male, age 61, both hemispheres 1071.6
Lateral parabrachial nucleus
nTPM: 1333.2
2139 Female, age 85, right hemisphere 1621.6
2013 Male, age 80, both hemispheres 1383.0
2792 Male, age 76, both hemispheres 1201.7
2790 Male, age 61, both hemispheres 1126.6
Lateral vestibular nucleus
nTPM: 1090.2
2311 Male, age 80, both hemispheres 1096.6
2184 Male, age 76, both hemispheres 1083.8
Locus coeruleus
nTPM: 1289.8
2014 Male, age 55, unknown 1622.2
2123 Female, age 91, both hemispheres 1590.1
2317 Female, age 72, unknown 1435.5
2788 Male, age 74, unknown 1202.8
1980 Male, age 76, both hemispheres 1194.5
2162 Male, age 80, both hemispheres 1038.7
2720 Male, age 74, both hemispheres 945.0
Medial olivary nucleus
nTPM: 1384.8
1943 Male, age 61, both hemispheres 1627.3
1962 Male, age 76, both hemispheres 1413.2
2138 Female, age 91, both hemispheres 1370.4
2851 Male, age 80, both hemispheres 1128.3
Medial parabrachial nucleus
nTPM: 1065.8
2170 Female, age 91, both hemispheres 1158.6
2854 Male, age 80, both hemispheres 1089.7
2463 Female, age 85, right hemisphere 1055.9
2156 Male, age 61, both hemispheres 1055.6
2786 Male, age 76, both hemispheres 969.3
Medial periolivary nuclei
nTPM: 1221.2
2791 Male, age 74, right hemisphere 1488.0
2063 Male, age 76, both hemispheres 1440.1
2171 Female, age 85, both hemispheres 1349.3
2081 Male, age 80, both hemispheres 1151.2
2458 Female, age 91, both hemispheres 677.4
Medial vestibular nucleus
nTPM: 1189.8
2134 Male, age 76, both hemispheres 1263.6
2743 Female, age 85, both hemispheres 1201.1
2801 Male, age 74, both hemispheres 1188.8
2624 Male, age 61, both hemispheres 1180.6
2093 Male, age 80, both hemispheres 1180.0
2803 Female, age 91, both hemispheres 1125.0
Motor facial nucleus
nTPM: 1074.6
2062 Male, age 76, both hemispheres 1471.8
2365 Male, age 74, right hemisphere 1327.6
2126 Male, age 61, both hemispheres 1076.1
2697 Female, age 85, both hemispheres 942.7
2795 Female, age 91, both hemispheres 867.9
2327 Male, age 80, both hemispheres 761.6
Motor hypoglossal nucleus
nTPM: 1075.9
2125 Female, age 91, both hemispheres 1190.3
2132 Female, age 85, both hemispheres 1168.4
2277 Male, age 76, both hemispheres 1093.3
2461 Male, age 61, both hemispheres 994.2
2182 Male, age 80, both hemispheres 933.3
Motor trigeminal nucleus
nTPM: 1021.4
2335 Male, age 61, both hemispheres 1245.9
2079 Male, age 80, both hemispheres 1202.5
2309 Male, age 76, both hemispheres 982.3
2560 Male, age 74, both hemispheres 940.3
2321 Female, age 91, both hemispheres 736.2
Nuclei of the trapezoid body
nTPM: 1153.3
1983 Male, age 76, both hemispheres 1472.7
2735 Female, age 85, both hemispheres 1356.9
2159 Male, age 61, both hemispheres 1293.3
2166 Male, age 80, both hemispheres 912.9
2368 Female, age 91, both hemispheres 730.6
Nucleus ambiguus
nTPM: 1407.0
2096 Female, age 85, both hemispheres 1461.1
2071 Male, age 76, both hemispheres 1352.9
Nucleus cuneatus
nTPM: 1049.0
2564 Male, age 74, both hemispheres 1405.5
2562 Male, age 61, both hemispheres 1116.4
2376 Male, age 61, both hemispheres 1107.3
2131 Male, age 76, both hemispheres 1106.3
2380 Male, age 80, both hemispheres 1102.1
2808 Female, age 85, both hemispheres 1088.0
2100 Male, age 76, both hemispheres 1021.1
2381 Male, age 80, both hemispheres 857.2
2805 Female, age 91, both hemispheres 636.9
Nucleus gracilis
nTPM: 1212.7
2627 Male, age 74, both hemispheres 1661.1
2299 Female, age 85, both hemispheres 1060.9
2382 Male, age 80, both hemispheres 916.0
Nucleus raphe magnus
nTPM: 1219.7
2160 Male, age 61, both hemispheres 1510.9
2051 Male, age 76, both hemispheres 1505.1
2172 Female, age 85, both hemispheres 1336.0
2455 Male, age 74, both hemispheres 1264.7
2328 Male, age 80, both hemispheres 900.7
2459 Female, age 91, both hemispheres 800.9
Nucleus raphe obscurus
nTPM: 1265.7
2142 Male, age 76, midline 1437.1
2800 Male, age 61, midline 1247.6
2845 Female, age 85, midline 1112.5
Nucleus raphe pallidus
nTPM: 1589.6
1924 Male, age 61, midline 2263.7
2145 Male, age 76, midline 1253.5
2183 Male, age 80, midline 1251.7
Nucleus tractus solitarii
nTPM: 1094.2
2144 Female, age 91, right hemisphere 1306.6
2191 Female, age 85, both hemispheres 1115.0
2656 Male, age 76, both hemispheres 1091.7
2307 Male, age 80, both hemispheres 863.6
Paramedian reticular nucleus
nTPM: 1248.1
2050 Female, age 85, both hemispheres 1402.8
2057 Male, age 80, both hemispheres 1295.4
2313 Male, age 61, both hemispheres 1161.7
2052 Male, age 76, both hemispheres 1132.3
Parvicellular reticular nuclei
nTPM: 1102.8
2119 Male, age 80, both hemispheres 1303.3
2095 Male, age 76, both hemispheres 1090.8
2558 Male, age 74, both hemispheres 914.2
Parvicellular reticular nuclei, medullary
nTPM: 1109.3
2091 Female, age 85, both hemispheres 1189.4
2189 Female, age 91, both hemispheres 1121.7
2181 Male, age 80, left hemisphere 1016.9
Pedunculopontine tegmental nucleus
nTPM: 1225.7
2338 Male, age 61, both hemispheres 1450.2
1921 Female, age 85, both hemispheres 1130.9
2334 Male, age 80, both hemispheres 1096.0
Peritrigeminal nucleus
nTPM: 1449.9
2067 Female, age 85, both hemispheres 1596.2
2179 Male, age 61, both hemispheres 1380.8
2136 Male, age 76, both hemispheres 1372.7
Pontine nuclei
nTPM: 1331.6
2787 Female, age 85, both hemispheres 1756.7
1863 Male, age 55, unknown 1595.6
2727 Male, age 61, right hemisphere 1496.7
2109 Female, age 72, unknown 1384.8
1968 Male, age 76, left hemisphere 1300.9
2115 Male, age 80, left hemisphere 1207.2
2454 Male, age 74, left hemisphere 960.0
2319 Female, age 91, both hemispheres 950.9
Pontine raphe nucleus
nTPM: 1229.4
2122 Female, age 85, midline 1354.1
2853 Male, age 76, midline 1104.7
Posteroventral cochlear nucleus
nTPM: 1118.9
2371 Male, age 61, both hemispheres 1312.6
2752 Female, age 85, both hemispheres 1153.6
2070 Male, age 76, both hemispheres 1146.1
2341 Male, age 80, both hemispheres 1007.2
2135 Female, age 91, both hemispheres 975.3
Prepositus hypoglossal nucleus
nTPM: 1136.8
2086 Male, age 80, both hemispheres 1153.3
2855 Female, age 85, right hemisphere 1120.4
Principal sensory trigeminal nucleus
nTPM: 1090.5
2158 Male, age 61, both hemispheres 1322.1
2008 Male, age 80, left hemisphere 1229.6
2324 Male, age 76, both hemispheres 993.3
2367 Female, age 91, left hemisphere 817.2
Reticular pontine nucleus, caudal
nTPM: 974.7
2092 Male, age 76, both hemispheres 1345.1
2332 Male, age 80, right hemisphere 939.5
2559 Male, age 74, both hemispheres 871.1
2457 Female, age 91, both hemispheres 743.2
Reticular pontine nucleus, oral
nTPM: 1113.7
2012 Female, age 85, both hemispheres 1456.9
1939 Male, age 80, both hemispheres 1318.2
2167 Male, age 76, both hemispheres 1036.0
2361 Male, age 74, both hemispheres 962.1
2366 Female, age 91, both hemispheres 795.1
Reticulotegmental nucleus
nTPM: 992.2
2325 Male, age 76, both hemispheres 1159.7
2333 Male, age 80, both hemispheres 1040.2
2452 Male, age 74, both hemispheres 923.2
2322 Female, age 91, both hemispheres 845.9
Spinal trigeminal nucleus, caudal
nTPM: 1094.6
2312 Male, age 61, both hemispheres 1129.6
2642 Male, age 74, both hemispheres 1101.7
2447 Male, age 76, both hemispheres 1099.1
2390 Female, age 91, both hemispheres 1088.6
2308 Male, age 80, both hemispheres 1053.9
Spinal trigeminal nucleus, interpolar
nTPM: 1257.2
2066 Male, age 76, right hemisphere 1435.9
2625 Male, age 61, both hemispheres 1432.3
2033 Male, age 80, both hemispheres 1331.4
2386 Female, age 85, both hemispheres 1148.6
2389 Female, age 91, both hemispheres 937.6
Spinal trigeminal nucleus, oral
nTPM: 1027.7
2737 Female, age 85, both hemispheres 1114.6
2164 Male, age 80, both hemispheres 984.8
1978 Male, age 76, both hemispheres 983.7
Spinal vestibular nucleus
nTPM: 1121.6
2796 Male, age 61, both hemispheres 1242.4
2780 Male, age 80, both hemispheres 1206.7
2186 Female, age 91, both hemispheres 1161.7
2748 Male, age 76, both hemispheres 1158.0
2806 Female, age 85, both hemispheres 1048.9
2384 Male, age 74, both hemispheres 912.1
Subcoeruleus area
nTPM: 1065.7
1958 Male, age 80, both hemispheres 1206.8
2369 Female, age 85, left hemisphere 1124.2
2323 Female, age 91, left hemisphere 1066.1
2089 Male, age 76, left hemisphere 1023.2
2451 Male, age 74, both hemispheres 908.3
Superior olive
nTPM: 1160.5
2364 Male, age 74, right hemisphere 1546.0
1875 Female, age 85, both hemispheres 1422.6
2020 Male, age 76, both hemispheres 1244.7
2329 Male, age 80, right hemisphere 851.6
2561 Female, age 91, both hemispheres 737.7
Superior vestibular nucleus
nTPM: 1407.1
2383 Male, age 74, both hemispheres 1739.0
2015 Male, age 80, both hemispheres 1324.6
2061 Male, age 76, both hemispheres 1157.8
Ventral medullary reticular nucleus
nTPM: 1067.0
2060 Male, age 76, both hemispheres 1096.3
2372 Male, age 61, both hemispheres 1037.7
Ventral periolivary nuclei
nTPM: 1119.4
2023 Male, age 76, both hemispheres 1308.2
2130 Female, age 85, both hemispheres 1292.1
2165 Male, age 80, both hemispheres 1165.8
2794 Female, age 91, left hemisphere 711.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1186.8
1986 Male, age 76, both hemispheres 1361.9
2180 Male, age 61, both hemispheres 1239.7
2741 Female, age 85, both hemispheres 1218.0
2118 Male, age 80, both hemispheres 1078.7
2302 Female, age 91, both hemispheres 1035.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1111.9
2359 Male, age 61, both hemispheres 1351.6
1959 Male, age 76, both hemispheres 1236.7
2840 Female, age 85, both hemispheres 1217.8
2161 Male, age 80, both hemispheres 1073.5
2449 Male, age 74, both hemispheres 1060.8
2456 Female, age 91, both hemispheres 731.2

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1208.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 977.9
FF:10165-103B3 76 years, female 1008.4
FF:10182-103D2 60 years, female 947.5
Medulla oblongata
Scaled Tags Per Million: 1208.7
FF:10174-103C3 60 years, female 1254.4
FF:10155-103A2 76 years, female 1203.5
FF:10038-101F2 18-64 years, mixed 1168.2
Pons
Scaled Tags Per Million: 976.9
FF:10033-101E6 18-54 years, mixed 976.9

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 890.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 890.9
Samples: 4

Max nTPM: 1048.9
Min nTPM: 776.4
Sample A Female 838.6
Sample B Female 776.4
Sample C Male 1048.9
Sample D Male 899.8
Pons
nTPM: 795.7
Samples: 4

Max nTPM: 901.7
Min nTPM: 646.5
Sample A Female 901.7
Sample B Female 646.5
Sample C Male 848.4
Sample D Male 786.1

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 985.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 985.1
Samples: 4

Max nTPM: 1004.1
Min nTPM: 943.1
Sample A Male 999.3
Sample B Male 993.8
Sample C Female 1004.1
Sample D Female 943.1

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 14.0
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 15.6
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 12.4
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 10.4
Pons
Expression energy: 14.3
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 15.1
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 13.6
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 10.8

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