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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:511.4 nTPM
FANTOM5:1186.3 Scaled Tags Per Million
Pig:516.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004426Antibody CAB004647
Glial cells HighHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 511.4
Samples: 246

Max nTPM: 907.5
Min nTPM: 154.5
Std nTPM: 136.9
Median nTPM: 480.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 907.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 877.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 869.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 867.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 866.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 854.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 840.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 813.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 777.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 777.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 774.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 771.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 768.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 761.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 746.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 744.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 743.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 742.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 737.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 736.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 728.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 719.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 710.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 703.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 693.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 680.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 680.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 679.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 673.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 672.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 672.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 671.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 663.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 663.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 661.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 660.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 660.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 659.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 658.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 658.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 657.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 657.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 655.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 651.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 648.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 647.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 639.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 638.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 629.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 628.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 624.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 622.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 620.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 618.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 618.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 617.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 616.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 616.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 608.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 607.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 607.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 607.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 600.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 599.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 595.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 592.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 592.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 591.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 588.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 586.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 583.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 581.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 579.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 577.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 572.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 571.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 568.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 566.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 566.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 559.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 555.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 555.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 554.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 553.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 553.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 552.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 551.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 550.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 544.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 544.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 542.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 542.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 539.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 536.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 533.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 528.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 526.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 525.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 525.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 522.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 522.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 521.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 511.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 511.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 511.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 506.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 504.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 503.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 501.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 500.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 500.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 500.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 499.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 498.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 496.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 496.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 495.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 490.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 485.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 484.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 482.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 482.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 481.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 479.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 478.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 478.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 477.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 476.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 475.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 475.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 475.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 473.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 473.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 473.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 473.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 472.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 472.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 471.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 468.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 466.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 465.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 464.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 462.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 461.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 461.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 460.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 458.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 457.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 457.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 454.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 454.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 452.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 451.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 450.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 450.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 449.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 447.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 447.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 446.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 445.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 443.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 441.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 439.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 439.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 439.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 436.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 435.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 435.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 435.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 434.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 432.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 431.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 430.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 428.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 428.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 427.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 425.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 425.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 425.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 423.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 419.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 418.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 418.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 418.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 417.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 417.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 416.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 416.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 416.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 415.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 411.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 410.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 409.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 406.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 406.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 404.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 404.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 403.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 403.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 401.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 400.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 399.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 393.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 391.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 386.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 385.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 383.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 378.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 376.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 376.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 370.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 370.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 368.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 368.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 366.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 364.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 363.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 359.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 359.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 357.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 356.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 354.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 348.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 343.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 342.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 342.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 341.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 339.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 337.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 333.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 331.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 331.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 331.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 319.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 312.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 311.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 303.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 301.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 300.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 299.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 295.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 289.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 281.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 254.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 186.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 154.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1186.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1186.3
FF:10164-103B2 76 years, female 1186.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

516.9
Pig sample Sample description nTPM
Caudate
nTPM: 517.0
Samples: 4

Max nTPM: 629.3
Min nTPM: 451.8
Sample A Female 451.8
Sample B Female 521.8
Sample C Male 629.3
Sample D Male 464.9

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