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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:474.6 nTPM
HPA:474.6 nTPM
GTEx:378.1 nTPM
FANTOM5:680.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004426Antibody CAB004647
Glandular cells HighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

474.6
overview
Male, age 65
Small intestine sample 232
nTPM: 440.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 472.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 513.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 470.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

378.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 378.1
Samples: 187

Max nTPM: 661.9
Min nTPM: 160.4
Std nTPM: 96.4
Median nTPM: 377.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 661.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 650.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 629.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 589.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 572.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 563.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 551.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 548.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 547.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 542.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 538.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 537.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 532.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 528.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 526.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 520.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 519.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 517.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 508.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 507.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 505.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 495.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 491.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 488.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 479.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 476.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 474.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 469.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 468.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 468.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 468.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 466.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 461.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 459.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 458.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 456.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 451.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 448.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 448.0
GTEX-1192X-2526-SM-59868 50-59 years, male 445.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 444.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 442.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 441.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 441.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 438.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 436.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 433.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 431.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 429.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 429.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 429.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 429.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 426.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 426.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 423.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 422.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 420.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 420.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 418.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 416.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 416.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 416.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 414.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 412.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 412.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 412.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 412.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 411.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 406.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 406.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 405.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 405.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 404.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 404.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 403.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 401.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 400.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 398.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 397.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 397.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 394.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 394.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 391.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 390.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 390.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 389.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 389.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 387.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 387.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 387.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 384.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 380.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 379.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 377.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 377.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 377.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 376.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 375.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 374.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 372.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 369.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 369.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 369.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 367.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 365.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 361.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 361.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 360.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 358.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 358.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 357.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 353.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 350.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 350.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 349.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 348.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 348.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 343.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 343.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 340.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 340.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 340.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 340.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 338.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 338.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 336.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 334.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 334.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 333.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 332.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 332.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 328.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 326.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 325.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 325.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 323.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 322.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 318.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 315.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 311.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 311.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 310.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 308.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 308.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 307.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 306.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 304.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 302.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 301.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 296.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 295.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 294.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 290.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 289.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 284.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 281.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 278.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 278.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 275.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 272.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 269.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 267.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 265.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 264.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 263.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 263.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 262.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 256.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 255.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 250.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 249.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 247.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 245.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 243.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 228.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 225.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 223.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 219.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 217.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 202.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 197.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 195.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 192.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 173.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 172.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 164.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 160.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

680.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 680.9
FF:10024-101D6 15,40,85 years, mixed 680.9

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