HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:377.8 nTPM
HPA Brain:1275.4 nTPM
GTEx:377.8 nTPM
FANTOM5:1133.3 Scaled Tags Per Million
Pig:645.8 nTPM
Mouse:1217.1 nTPM
Allen mouse:23.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004426Antibody CAB004647
Glial cells HighHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 1275.4
Sample id Sample description nTPM
Hippocampus
nTPM: 1167.0
1898 Male, age 80, left hemisphere 1451.5
2529 Female, age 94, left hemisphere 1169.3
2148 Female, age 91, left hemisphere 1163.5
1855 Male, age 76, left hemisphere 1095.2
2621 Female, age 67, right hemisphere 1067.5
1911 Female, age 85, right hemisphere 1055.3
Dentate gyrus
nTPM: 1187.8
1927 Female, age 91, both hemispheres 1348.7
2530 Female, age 94, left hemisphere 1335.2
2010 Male, age 76, both hemispheres 1265.5
2528 Male, age 74, both hemispheres 1249.3
2246 Female, age 85, both hemispheres 1066.5
2531 Female, age 67, both hemispheres 861.4
Entorhinal gyrus
nTPM: 1121.2
2117 Female, age 91, right hemisphere 1397.9
1938 Female, age 85, left hemisphere 1253.4
2764 Male, age 80, right hemisphere 1235.1
1787 Male, age 76, left hemisphere 1141.5
2613 Female, age 94, left hemisphere 1077.4
2686 Male, age 75, right hemisphere 622.0
Hippocampus, CA1
nTPM: 1275.4
2749 Male, age 80, left hemisphere 1562.2
2045 Male, age 76, both hemispheres 1280.1
1873 Female, age 85, both hemispheres 1271.1
2082 Female, age 91, right hemisphere 1150.0
2527 Male, age 74, both hemispheres 1113.7
Hippocampus, CA2
nTPM: 1227.1
2249 Male, age 74, both hemispheres 1340.0
1963 Male, age 80, left hemisphere 1318.7
1892 Male, age 76, both hemispheres 1274.4
1940 Female, age 85, left hemisphere 1204.1
2113 Female, age 91, right hemisphere 1129.0
2437 Female, age 94, left hemisphere 1096.3
Hippocampus, CA3
nTPM: 1152.1
2620 Female, age 94, left hemisphere 1326.9
2436 Male, age 74, both hemispheres 1275.3
2137 Male, age 80, left hemisphere 1271.8
1867 Male, age 76, both hemispheres 1196.6
1891 Female, age 85, both hemispheres 1122.3
2861 Female, age 67, both hemispheres 719.9
Parahippocampal cortex
nTPM: 1035.1
1850 Male, age 80, both hemispheres 1339.2
1990 Female, age 91, right hemisphere 1184.6
1933 Female, age 85, both hemispheres 1135.8
2018 Male, age 76, both hemispheres 1110.9
2250 Female, age 67, right hemisphere 1093.0
2245 Female, age 91, both hemispheres 1046.4
2532 Female, age 72, left hemisphere 977.8
2693 Female, age 94, both hemispheres 899.3
2692 Male, age 74, both hemispheres 875.1
2622 Female, age 67, right hemisphere 688.4
Perirhinal gyrus
nTPM: 1228.5
1847 Female, age 91, left hemisphere 1490.1
1794 Male, age 80, right hemisphere 1422.9
1841 Female, age 85, right hemisphere 1228.8
2521 Female, age 94, right hemisphere 1011.2
2848 Male, age 76, right hemisphere 989.6
Subiculum
nTPM: 1105.6
1901 Male, age 80, both hemispheres 1225.7
2729 Female, age 91, right hemisphere 1220.1
2042 Male, age 76, both hemispheres 1141.9
1977 Female, age 85, both hemispheres 1135.5
2619 Male, age 74, both hemispheres 1052.1
2438 Female, age 94, left hemisphere 858.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 377.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 377.8
Samples: 197

Max nTPM: 995.9
Min nTPM: 88.1
Std nTPM: 140.7
Median nTPM: 361.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 995.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 846.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 818.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 703.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 667.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 662.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 652.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 643.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 635.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 628.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 619.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1133.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1133.3
FF:10169-103B7 60 years, female 1198.5
FF:10153-102I9 76 years, female 1068.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 645.8
Pig sample Sample description nTPM
Subiculum
nTPM: 559.5
Samples: 4

Max nTPM: 691.7
Min nTPM: 468.4
Sample A Female 691.7
Sample B Female 520.3
Sample C Male 557.4
Sample D Male 468.4
Dorsal hippocampus
nTPM: 645.8
Samples: 4

Max nTPM: 806.5
Min nTPM: 442.7
Sample A Female 806.5
Sample B Female 616.2
Sample C Male 717.8
Sample D Male 442.7
Entorhinal cortex
nTPM: 486.7
Samples: 4

Max nTPM: 552.5
Min nTPM: 386.5
Sample A Female 534.9
Sample B Female 472.7
Sample C Male 552.5
Sample D Male 386.5
Ventral hippocampus
nTPM: 641.7
Samples: 4

Max nTPM: 876.1
Min nTPM: 445.1
Sample A Female 681.0
Sample B Female 445.1
Sample C Male 876.1
Sample D Male 564.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1217.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1217.1
Samples: 4

Max nTPM: 1345.2
Min nTPM: 1163.2
Sample A Male 1184.9
Sample B Male 1175.2
Sample C Female 1163.2
Sample D Female 1345.2
Hippocampal formation
nTPM: 1168.6
Samples: 4

Max nTPM: 1246.3
Min nTPM: 1092.2
Sample A Male 1092.2
Sample B Male 1120.3
Sample C Female 1215.4
Sample D Female 1246.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 23.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.1
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 30.5
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 15.6
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 14.9

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