We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPL23A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RPL23A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1177.8 nTPM
HPA Brain:295.8 nTPM
GTEx:1177.8 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:1986.3 nTPM
Mouse:1125.0 nTPM
Allen mouse:12.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.8
Sample id Sample description nTPM
Amygdala
nTPM: 293.9
2695 Female, age 67, right hemisphere 361.2
2514 Male, age 75, right hemisphere 312.9
2517 Female, age 94, left hemisphere 276.3
2814 Male, age 76, right hemisphere 267.4
1987 Female, age 91, left hemisphere 251.5
Basal amygdala
nTPM: 231.1
2827 Female, age 67, right hemisphere 332.7
2609 Male, age 75, right hemisphere 262.6
2110 Male, age 80, left hemisphere 240.0
2685 Female, age 94, left hemisphere 200.0
1955 Male, age 76, both hemispheres 185.1
2243 Female, age 91, right hemisphere 166.3
Central amygdala
nTPM: 279.8
2826 Female, age 94, left hemisphere 453.5
2515 Male, age 75, right hemisphere 313.6
1905 Male, age 76, both hemispheres 226.5
2239 Male, age 80, left hemisphere 213.8
2701 Female, age 91, right hemisphere 191.5
Corticomedial amygdala
nTPM: 220.8
2428 Male, age 75, right hemisphere 276.1
2829 Male, age 80, left hemisphere 241.7
2535 Female, age 67, right hemisphere 214.9
2429 Female, age 94, left hemisphere 209.7
2240 Male, age 76, both hemispheres 192.3
2242 Female, age 91, right hemisphere 189.9
Lateral amygdala
nTPM: 295.8
2830 Female, age 67, right hemisphere 444.7
2516 Male, age 75, right hemisphere 385.1
2534 Female, age 94, left hemisphere 316.7
2256 Male, age 80, left hemisphere 240.8
1883 Male, age 76, both hemispheres 199.4
2255 Female, age 91, right hemisphere 188.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1177.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1177.8
Samples: 152

Max nTPM: 3628.2
Min nTPM: 555.4
Std nTPM: 486.6
Median nTPM: 1066.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3628.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3031.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3007.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2892.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2327.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2241.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2062.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2048.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1986.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1967.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1935.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1925.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1916.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1878.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1797.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1794.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1730.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1715.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1713.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1669.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1643.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1629.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1582.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1576.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1520.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1499.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1485.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1481.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1445.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1425.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1417.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1411.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1402.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1384.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1359.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1357.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1332.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1318.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1287.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1268.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1261.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1257.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1256.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1252.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1247.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1246.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1241.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1223.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1220.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1215.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1214.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1213.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1202.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1199.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1198.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1196.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1192.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1175.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1169.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1162.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1148.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1135.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1126.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1124.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1122.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1119.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1117.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1115.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1102.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1090.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1085.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1083.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1078.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1075.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1074.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1073.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1059.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1052.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1047.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1044.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1035.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1034.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1033.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1024.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1013.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1006.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 999.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 997.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 996.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 985.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 965.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 962.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 961.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 955.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 950.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 948.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 946.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 941.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 938.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 933.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 931.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 920.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 917.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 910.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 906.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 904.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 903.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 889.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 889.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 884.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 875.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 875.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 873.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 870.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 866.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 855.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 854.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 852.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 848.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 835.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 832.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 822.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 819.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 814.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 808.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 804.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 804.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 802.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 801.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 796.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 791.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 788.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 777.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 763.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 754.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 752.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 752.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 747.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 747.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 725.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 724.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 704.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 702.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 701.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 691.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 651.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 608.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 598.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 597.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 594.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 574.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 555.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 13.0
FF:10151-102I7 76 years, female 13.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1986.3
Pig sample Sample description nTPM
Amygdala
nTPM: 1986.4
Samples: 4

Max nTPM: 2560.5
Min nTPM: 1210.1
Sample A Female 2560.5
Sample B Female 2283.2
Sample C Male 1891.6
Sample D Male 1210.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1125.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 1125.0
Samples: 4

Max nTPM: 1216.9
Min nTPM: 1032.8
Sample A Male 1032.8
Sample B Male 1137.1
Sample C Female 1216.9
Sample D Female 1113.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.3
100144177 Antisense, RP_110407_03_C10, Mouse strain C57BL/6J (56 days, male) 12.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org