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RPL23A
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:333.0 nTPM
GTEx:333.0 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:830.2 nTPM
Mouse:1579.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

333.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 333.0
Samples: 105

Max nTPM: 446.4
Min nTPM: 200.2
Std nTPM: 51.7
Median nTPM:
379_1 60 years, male 446.4
491_1 89 years, female 434.5
35_1 74 years, female 424.5
414_1 84 years, female 424.3
389_1 86 years, female 421.4
415_1 77 years, female 417.3
120_1 70 years, female 415.0
384_1 83 years, male 413.2
126_1 63 years, male 410.1
307_1 66 years, female 406.4
375_1 74 years, female 406.4
145_1 84 years, male 405.5
4_1 88 years, female 403.9
153_1 70 years, female 403.6
321_1 62 years, female 402.6
490_1 67 years, female 396.5
17_1 71 years, male 393.6
526_1 61 years, male 390.6
162_1 79 years, female 388.0
119_1 70 years, female 386.6
218_1 71 years, female 384.2
42_1 85 years, male 384.1
396_1 62 years, male 378.2
495_1 57 years, female 375.7
394_1 75 years, female 373.2
137_1 83 years, male 371.8
308_1 70 years, female 370.9
189_1 76 years, male 370.4
413_1 59 years, female 370.3
2_1 77 years, female 368.2
6_1 73 years, female 368.2
376_1 75 years, female 368.1
117_1 61 years, male 364.8
377_1 82 years, female 361.3
237_1 82 years, male 356.2
447_1 81 years, male 355.8
466_1 57 years, female 352.2
173_1 67 years, male 351.0
311_1 78 years, male 350.2
347_1 72 years, male 346.7
499_1 55 years, female 346.3
142_1 61 years, female 342.6
243_1 75 years, male 339.0
319_1 81 years, male 338.3
468_1 89 years, male 338.0
139_1 64 years, female 336.5
115_1 83 years, male 336.2
315_1 62 years, female 336.0
404_1 82 years, female 335.1
452_1 88 years, female 334.4
322_1 76 years, male 334.1
386_1 76 years, male 333.9
99_1 64 years, male 333.4
518_1 75 years, female 332.6
313_1 79 years, female 330.0
501_1 88 years, male 329.1
246_1 77 years, male 325.7
109_1 81 years, female 322.0
320_1 89 years, female 321.4
317_1 60 years, male 320.0
406_1 79 years, male 318.3
335_1 73 years, female 317.6
503_1 68 years, male 315.8
316_1 62 years, male 315.1
172_1 72 years, female 313.3
405_1 91 years, male 311.7
18_1 88 years, male 309.7
349_1 83 years, male 309.1
355_1 70 years, female 306.0
265_1 87 years, male 305.9
177_1 74 years, male 305.2
266_1 85 years, male 302.6
254_1 77 years, female 301.7
32_1 67 years, male 301.6
324_1 76 years, male 301.6
480_1 63 years, male 300.9
217_1 76 years, male 300.0
506_1 65 years, male 296.7
229_1 69 years, female 293.6
350_1 84 years, female 293.3
351_1 91 years, male 292.3
288_1 66 years, female 288.7
295_1 61 years, female 286.5
354_1 81 years, female 283.5
9_1 66 years, female 282.3
89_1 63 years, male 281.5
291_1 76 years, male 278.7
517_1 88 years, male 275.6
286_1 68 years, female 273.6
425_1 59 years, female 273.0
352_1 62 years, male 272.5
318_1 68 years, male 271.8
314_1 67 years, male 271.2
348_1 84 years, male 269.6
353_1 82 years, female 268.2
264_1 73 years, female 267.4
251_1 78 years, male 265.4
293_1 68 years, female 264.2
356_1 87 years, female 263.4
292_1 71 years, male 257.1
81_1 67 years, male 252.6
43_1 64 years, female 248.6
149_1 88 years, male 245.1
163_1 78 years, male 236.6
41_1 94 years, female 200.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 6.5
FF:10030-101E3 24-65 years, mixed 6.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

830.2
Pig sample Sample description nTPM
Retina
nTPM: 830.2
Samples: 4

Max nTPM: 994.6
Min nTPM: 732.3
Sample A Female 846.5
Sample B Female 747.4
Sample C Male 994.6
Sample D Male 732.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1579.1
Mouse sample Sample description nTPM
Retina
nTPM: 1579.1
Samples: 4

Max nTPM: 1916.0
Min nTPM: 1311.5
Sample A Male 1609.1
Sample B Male 1311.5
Sample C Female 1916.0
Sample D Female 1479.9

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