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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:665.3 nTPM
HPA Brain:1022.2 nTPM
GTEx:665.3 nTPM
FANTOM5:2117.3 Scaled Tags Per Million
Mouse:1578.5 nTPM
Allen mouse:21.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1022.2
Sample id Sample description nTPM
Amygdala
nTPM: 921.7
2814 Male, age 76, right hemisphere 1243.2
1987 Female, age 91, left hemisphere 864.8
2514 Male, age 75, right hemisphere 848.4
2517 Female, age 94, left hemisphere 835.3
2695 Female, age 67, right hemisphere 816.6
Basal amygdala
nTPM: 955.9
2243 Female, age 91, right hemisphere 1177.4
2110 Male, age 80, left hemisphere 1018.5
1955 Male, age 76, both hemispheres 987.8
2609 Male, age 75, right hemisphere 905.6
2685 Female, age 94, left hemisphere 900.4
2827 Female, age 67, right hemisphere 745.7
Central amygdala
nTPM: 936.3
1905 Male, age 76, both hemispheres 1041.6
2826 Female, age 94, left hemisphere 1023.9
2239 Male, age 80, left hemisphere 979.6
2515 Male, age 75, right hemisphere 834.7
2701 Female, age 91, right hemisphere 801.6
Corticomedial amygdala
nTPM: 1022.2
2829 Male, age 80, left hemisphere 1280.4
2242 Female, age 91, right hemisphere 1219.9
2240 Male, age 76, both hemispheres 1129.3
2428 Male, age 75, right hemisphere 957.4
2429 Female, age 94, left hemisphere 881.6
2535 Female, age 67, right hemisphere 664.4
Lateral amygdala
nTPM: 831.5
1883 Male, age 76, both hemispheres 1049.0
2534 Female, age 94, left hemisphere 975.7
2516 Male, age 75, right hemisphere 844.1
2830 Female, age 67, right hemisphere 767.8
2255 Female, age 91, right hemisphere 681.1
2256 Male, age 80, left hemisphere 671.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

665.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 665.3
Samples: 152

Max nTPM: 1663.8
Min nTPM: 239.1
Std nTPM: 268.2
Median nTPM: 615.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1663.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1596.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1462.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1434.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1207.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1196.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1184.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1165.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1088.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1061.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1057.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1055.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1031.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1017.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1008.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 998.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 989.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 980.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 977.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 951.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 951.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 943.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 940.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 918.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 912.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 897.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 893.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 888.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 887.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 882.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 877.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 870.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 860.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 859.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 856.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 856.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 839.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 837.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 836.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 832.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 830.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 830.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 827.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 822.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 819.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 807.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 799.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 796.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 782.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 754.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 747.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 739.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 736.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 729.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 716.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 711.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 708.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 703.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 702.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 700.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 689.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 688.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 683.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 681.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 673.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 664.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 662.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 661.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 656.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 653.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 645.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 635.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 634.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 632.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 627.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 622.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 607.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 599.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 597.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 588.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 580.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 577.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 576.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 567.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 567.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 564.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 563.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 561.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 558.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 558.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 556.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 541.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 540.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 537.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 537.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 527.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 522.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 520.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 514.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 511.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 509.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 509.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 506.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 506.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 503.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 497.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 494.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 487.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 486.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 485.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 484.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 480.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 477.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 476.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 468.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 465.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 464.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 461.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 440.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 435.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 433.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 426.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 425.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 423.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 422.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 404.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 403.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 403.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 398.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 394.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 394.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 392.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 384.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 383.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 379.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 376.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 371.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 361.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 355.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 339.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 339.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 339.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 338.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 336.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 334.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 334.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 325.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 307.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 298.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 243.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 242.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 239.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2117.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 2117.3
FF:10151-102I7 76 years, female 2117.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1578.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1578.5
Samples: 4

Max nTPM: 1771.6
Min nTPM: 1442.2
Sample A Male 1442.2
Sample B Male 1570.4
Sample C Female 1771.6
Sample D Female 1529.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.9
179 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 21.9
180 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 15.5

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