MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:395.7 nTPM
HPA Brain:912.6 nTPM
GTEx:395.7 nTPM
FANTOM5:1068.1 Scaled Tags Per Million
Mouse:950.2 nTPM
Allen mouse:12.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 912.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 715.8
2019 Male, age 18, unknown 1041.9
2666 Male, age 74, left hemisphere 817.5
2586 Male, age 75, left hemisphere 802.9
1827 Male, age 72, unknown 799.6
2828 Female, age 72, unknown 632.9
1870 Female, age 42, unknown 631.6
1833 Male, age 53, unknown 622.8
1830 Male, age 51, unknown 611.4
2411 Female, age 72, unknown 608.0
2219 Male, age 76, both hemispheres 589.5
Dorsal raphe nucleus
nTPM: 616.8
2298 Female, age 72, unknown 692.3
1828 Male, age 53, unknown 655.6
2047 Male, age 72, unknown 633.0
2016 Female, age 72, unknown 574.2
2750 Male, age 76, both hemispheres 529.1
Inferior colliculus
nTPM: 710.0
2097 Female, age 72, unknown 806.1
2849 Male, age 72, unknown 701.9
1848 Female, age 42, unknown 697.5
1890 Male, age 53, unknown 634.6
Median raphe nucleus
nTPM: 585.9
2220 Male, age 76, midline 585.9
Periaquaductal grey, anterior
nTPM: 725.7
2502 Female, age 75, unknown 814.8
1795 Male, age 51, unknown 712.2
1947 Male, age 18, unknown 650.2
Periaquaductal grey, dorsal
nTPM: 615.8
2850 Male, age 76, both hemispheres 664.2
1840 Male, age 53, unknown 623.2
2464 Female, age 72, unknown 589.0
1831 Male, age 72, unknown 586.7
Periaquaductal grey, lateral
nTPM: 590.5
2272 Male, age 74, both hemispheres 627.2
2053 Male, age 18, unknown 624.5
2140 Male, age 76, both hemispheres 520.0
Pretectal area
nTPM: 912.6
1816 Male, age 51, unknown 1348.4
1944 Female, age 72, unknown 1347.3
1817 Female, age 42, unknown 1310.0
2007 Male, age 72, unknown 1266.3
1815 Male, age 53, unknown 1068.8
2407 Male, age 75, both hemispheres 681.5
2667 Female, age 75, unknown 672.5
2224 Female, age 72, unknown 650.4
2273 Male, age 74, both hemispheres 626.6
2825 Male, age 18, unknown 583.7
2316 Male, age 76, right hemisphere 482.9
Red nucleus
nTPM: 661.0
2785 Male, age 18, unknown 925.8
1821 Female, age 72, unknown 763.9
2588 Male, age 74, left hemisphere 723.8
2584 Male, age 75, left hemisphere 707.5
2725 Female, age 75, unknown 704.6
2503 Female, age 72, unknown 656.8
1865 Male, age 51, unknown 630.5
1954 Female, age 42, unknown 621.4
2823 Male, age 76, right hemisphere 592.7
2769 Male, age 72, unknown 539.8
2227 Male, age 72, unknown 535.0
1904 Male, age 53, unknown 530.1
Substantia nigra
nTPM: 725.4
1889 Female, age 72, unknown 1023.7
1941 Male, age 53, unknown 1009.5
2665 Male, age 74, both hemispheres 798.4
2583 Male, age 75, right hemisphere 728.1
2590 Female, age 75, unknown 711.9
1851 Male, age 51, unknown 645.8
1916 Female, age 42, unknown 641.1
2241 Male, age 72, unknown 609.5
2409 Female, age 72, unknown 600.6
2699 Male, age 18, unknown 485.8
Superior colliculus
nTPM: 778.5
2087 Female, age 72, unknown 991.1
2664 Male, age 75, both hemispheres 844.7
2261 Male, age 18, unknown 819.1
1995 Male, age 72, unknown 802.8
2668 Female, age 75, unknown 799.4
1895 Male, age 76, right hemisphere 727.9
1913 Female, age 42, unknown 725.6
1796 Male, age 53, unknown 701.3
2587 Male, age 74, left hemisphere 694.2
1839 Male, age 51, unknown 678.8
Ventral tegmental area
nTPM: 600.7
2223 Female, age 72, unknown 687.5
2410 Female, age 72, unknown 661.8
2218 Male, age 76, both hemispheres 600.7
1942 Male, age 51, unknown 569.8
1915 Female, age 42, unknown 557.0
2021 Male, age 53, unknown 527.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 395.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 395.7
Samples: 139

Max nTPM: 1144.3
Min nTPM: 248.0
Std nTPM: 104.7
Median nTPM: 374.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1144.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 741.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 709.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 617.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 609.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 588.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 579.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 571.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 569.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 549.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 533.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1068.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1068.1
FF:10158-103A5 76 years, female 1068.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 950.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 950.2
Samples: 4

Max nTPM: 1001.5
Min nTPM: 922.4
Sample A Male 922.4
Sample B Male 933.2
Sample C Female 1001.5
Sample D Female 943.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.7
179 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 12.7
180 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 8.3

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