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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:267.8 nTPM
HPA:267.8 nTPM
GTEx:194.5 nTPM
FANTOM5:1433.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999Antibody CAB018558
Glandular cells HighHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.8
overview
Male, age 65
Small intestine sample 232
nTPM: 296
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 260.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 284.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 229.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 194.5
Samples: 187

Max nTPM: 467.1
Min nTPM: 59.5
Std nTPM: 95.5
Median nTPM: 162.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 467.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 430.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 420.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 413.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 407.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 402.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 397.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 392.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 388.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 367.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 366.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 364.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 360.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 357.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 351.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 351.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 350.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 348.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 345.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 343.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 336.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 333.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 329.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 327.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 323.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 319.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 318.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 317.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 314.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 309.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 308.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 307.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 302.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 300.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 297.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 296.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 289.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 281.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 279.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 279.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 277.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 271.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 268.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 267.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 263.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 259.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 257.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 255.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 254.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 253.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 251.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 251.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 250.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 249.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 246.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 244.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 241.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 238.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 236.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 233.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 233.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 228.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 223.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 223.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 221.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 221.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 220.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 217.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 216.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 216.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 213.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 210.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 207.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 205.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 204.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 201.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 198.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 196.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 194.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 193.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 186.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 185.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 183.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 180.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 178.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 176.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 175.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 174.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 172.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 169.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 166.6
GTEX-1192X-2526-SM-59868 50-59 years, male 165.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 164.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 162.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 161.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 158.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 157.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 157.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 157.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 156.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 156.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 153.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 153.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 153.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 152.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 150.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 148.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 147.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 147.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 144.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 141.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 141.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 140.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 138.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 138.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 138.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 137.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 136.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 135.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 135.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 134.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 133.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 133.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 133.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 132.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 128.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 128.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 127.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 126.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 125.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 125.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 124.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 122.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 122.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 122.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 121.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 120.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 119.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 118.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 118.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 117.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 117.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 114.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 113.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 113.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 113.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 112.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 112.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 110.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 109.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 107.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 107.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 106.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 105.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 103.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 103.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 102.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 99.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 99.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 99.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 98.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 98.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 98.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 98.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 97.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 97.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 93.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 93.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 93.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 93.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 92.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 90.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 90.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 86.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 86.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 85.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 85.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 83.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 82.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 78.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 71.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 70.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 68.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 63.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 63.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 60.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 59.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1433.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1433.8
FF:10024-101D6 15,40,85 years, mixed 1433.8

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