We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
14714.1
nTPM
HPA Brain:
40133.4
nTPM
GTEx:
14714.1
nTPM
Pig:
6201.7
nTPM
Mouse:
100.9
nTPM
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40133.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 24146.2
2219
Male, age 76, both hemispheres
49685.9
2666
Male, age 74, left hemisphere
28063.0
2828
Female, age 72, unknown
27284.9
1833
Male, age 53, unknown
26005.3
1830
Male, age 51, unknown
25948.2
2586
Male, age 75, left hemisphere
25796.6
1827
Male, age 72, unknown
17820.4
1870
Female, age 42, unknown
17668.9
2019
Male, age 18, unknown
12871.5
2411
Female, age 72, unknown
10316.8
Dorsal raphe nucleus nTPM: 12679.7
1828
Male, age 53, unknown
21680.9
2750
Male, age 76, both hemispheres
15952.3
2047
Male, age 72, unknown
10799.0
2016
Female, age 72, unknown
9532.2
2298
Female, age 72, unknown
5433.9
Inferior colliculus nTPM: 19154.2
2849
Male, age 72, unknown
41372.5
1890
Male, age 53, unknown
16074.5
1848
Female, age 42, unknown
12034.8
2097
Female, age 72, unknown
7135.2
Median raphe nucleus nTPM: 40133.4
2220
Male, age 76, midline
40133.4
Periaquaductal grey, anterior nTPM: 14455.2
2502
Female, age 75, unknown
19514.5
1795
Male, age 51, unknown
12825.9
1947
Male, age 18, unknown
11025.3
Periaquaductal grey, dorsal nTPM: 22147.1
2850
Male, age 76, both hemispheres
42176.8
1831
Male, age 72, unknown
18635.6
2464
Female, age 72, unknown
17261.5
1840
Male, age 53, unknown
10514.5
Periaquaductal grey, lateral nTPM: 12024.4
2140
Male, age 76, both hemispheres
18010.9
2053
Male, age 18, unknown
10180.3
2272
Male, age 74, both hemispheres
7882.1
Pretectal area nTPM: 19269.4
1816
Male, age 51, unknown
30007.2
1815
Male, age 53, unknown
28582.0
2667
Female, age 75, unknown
26344.7
1817
Female, age 42, unknown
25962.0
1944
Female, age 72, unknown
25257.0
2825
Male, age 18, unknown
21096.4
2007
Male, age 72, unknown
16409.2
2407
Male, age 75, both hemispheres
12608.6
2224
Female, age 72, unknown
10613.6
2273
Male, age 74, both hemispheres
7602.0
2316
Male, age 76, right hemisphere
7480.9
Red nucleus nTPM: 19603.0
2503
Female, age 72, unknown
26442.8
2584
Male, age 75, left hemisphere
25115.5
2588
Male, age 74, left hemisphere
23296.9
2823
Male, age 76, right hemisphere
23186.9
1954
Female, age 42, unknown
22846.1
2227
Male, age 72, unknown
19300.3
2785
Male, age 18, unknown
19094.3
1904
Male, age 53, unknown
17343.0
2769
Male, age 72, unknown
16698.5
1865
Male, age 51, unknown
14993.2
2725
Female, age 75, unknown
14064.5
1821
Female, age 72, unknown
12854.1
Substantia nigra nTPM: 24562.1
2665
Male, age 74, both hemispheres
55024.5
2699
Male, age 18, unknown
44482.1
1916
Female, age 42, unknown
25750.3
1941
Male, age 53, unknown
24232.5
2409
Female, age 72, unknown
18158.0
2583
Male, age 75, right hemisphere
18109.9
2241
Male, age 72, unknown
16454.0
2590
Female, age 75, unknown
14932.2
1889
Female, age 72, unknown
14654.8
1851
Male, age 51, unknown
13822.3
Superior colliculus nTPM: 17109.8
2664
Male, age 75, both hemispheres
28275.7
2087
Female, age 72, unknown
20407.5
1913
Female, age 42, unknown
18891.9
1839
Male, age 51, unknown
18226.2
2261
Male, age 18, unknown
16126.6
2587
Male, age 74, left hemisphere
15892.3
2668
Female, age 75, unknown
15480.3
1995
Male, age 72, unknown
13357.5
1895
Male, age 76, right hemisphere
12922.3
1796
Male, age 53, unknown
11517.9
Ventral tegmental area nTPM: 20406.2
2218
Male, age 76, both hemispheres
35145.5
2223
Female, age 72, unknown
24752.6
1942
Male, age 51, unknown
18806.3
1915
Female, age 42, unknown
15541.5
2410
Female, age 72, unknown
15039.9
2021
Male, age 53, unknown
13151.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14714.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 14714.1
Samples: 139
Max nTPM: 85108.8
Min nTPM: 2063.5
Std nTPM: 13203.2
Median nTPM: 9963.0
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
