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  • SUMMARY

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  • BRAIN

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  • MT-ND6
BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PONS AND MEDULLA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:45442.9 nTPM
Pig:6888.0 nTPM
Mouse:136.8 nTPM

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45442.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 26726.1
2301 Female, age 85, both hemispheres 53645.0
2188 Female, age 91, both hemispheres 20892.3
1984 Male, age 76, both hemispheres 18463.1
2090 Male, age 80, both hemispheres 13904.0
Area postrema
nTPM: 38855.8
2306 Male, age 80, both hemispheres 58799.8
2799 Male, age 61, both hemispheres 39461.0
2054 Male, age 76, both hemispheres 18306.6
Dorsal cochlear nucleus
nTPM: 28361.1
2378 Male, age 80, both hemispheres 46358.7
2802 Male, age 74, right hemisphere 28661.1
2058 Male, age 76, both hemispheres 23660.2
2187 Female, age 91, both hemispheres 21685.0
2370 Male, age 61, both hemispheres 21440.6
Dorsal medullary reticular nucleus
nTPM: 21429.2
2373 Male, age 61, both hemispheres 29680.0
2088 Male, age 76, both hemispheres 27175.5
2040 Female, age 85, both hemispheres 7432.0
Dorsal motor vagal complex
nTPM: 35094.4
2797 Male, age 61, both hemispheres 67087.5
2807 Female, age 85, both hemispheres 58911.6
2185 Male, age 76, both hemispheres 46934.9
2813 Female, age 72, unknown 29895.5
2643 Male, age 74, both hemispheres 28518.3
2844 Male, age 55, unknown 23445.8
2133 Female, age 91, both hemispheres 15509.8
2000 Male, age 74, unknown 10452.2
Dorsal tegmental nucleus
nTPM: 27256.0
2358 Male, age 61, both hemispheres 52853.6
2083 Male, age 80, both hemispheres 19791.2
1936 Male, age 76, left hemisphere 18941.8
2326 Male, age 74, both hemispheres 17437.6
Dorsolateral tegmental area
nTPM: 15533.0
2141 Male, age 76, both hemispheres 28222.8
2337 Male, age 61, both hemispheres 18789.2
2654 Male, age 80, both hemispheres 12691.8
2751 Female, age 85, both hemispheres 9268.7
2360 Male, age 74, both hemispheres 8692.6
Gigantocellular reticular nuclei, medullary
nTPM: 26927.3
2310 Male, age 80, both hemispheres 49296.6
2387 Female, age 91, both hemispheres 40759.3
2314 Male, age 61, both hemispheres 34035.2
2462 Male, age 74, both hemispheres 19307.0
2022 Male, age 76, right hemisphere 11747.5
1876 Female, age 85, both hemispheres 6418.4
Gigantocellular reticular nuclei, pars
nTPM: 41187.1
2330 Male, age 80, both hemispheres 81629.6
2706 Male, age 80, both hemispheres 53803.8
2336 Male, age 61, both hemispheres 27898.6
2168 Male, age 76, both hemispheres 23580.7
2084 Female, age 85, both hemispheres 19022.9
Inferior olive
nTPM: 29981.6
2628 Female, age 91, both hemispheres 54970.6
2379 Male, age 80, both hemispheres 44502.1
2178 Male, age 61, both hemispheres 19804.6
2085 Female, age 85, both hemispheres 18722.2
2563 Male, age 74, both hemispheres 11908.7
Kolliker-Fuse nucleus
nTPM: 25678.9
2793 Female, age 91, left hemisphere 45038.1
2163 Male, age 80, both hemispheres 23413.2
2315 Male, age 76, right hemisphere 8585.3
Lateral lemniscal nuclei
nTPM: 23458.9
2320 Female, age 91, left hemisphere 37691.5
2169 Male, age 76, both hemispheres 33671.0
2453 Male, age 74, right hemisphere 30558.9
2036 Male, age 80, both hemispheres 8382.3
2746 Female, age 85, left hemisphere 6991.1
Lateral medullary reticular nucleus
nTPM: 21315.1
2374 Male, age 61, both hemispheres 42775.2
2804 Female, age 91, both hemispheres 30785.1
2190 Female, age 85, both hemispheres 21990.3
2044 Male, age 76, both hemispheres 13641.0
2852 Male, age 80, both hemispheres 10981.0
2305 Male, age 74, both hemispheres 7718.2
Lateral parabrachial nucleus
nTPM: 15058.7
2792 Male, age 76, both hemispheres 25246.7
2790 Male, age 61, both hemispheres 16575.2
2139 Female, age 85, right hemisphere 11147.9
2013 Male, age 80, both hemispheres 7264.9
Lateral vestibular nucleus
nTPM: 42829.7
2184 Male, age 76, both hemispheres 48176.8
2311 Male, age 80, both hemispheres 37482.6
Locus coeruleus
nTPM: 19450.5
2720 Male, age 74, both hemispheres 35656.2
2162 Male, age 80, both hemispheres 26511.8
2788 Male, age 74, unknown 20683.5
2317 Female, age 72, unknown 17846.1
1980 Male, age 76, both hemispheres 16181.7
2014 Male, age 55, unknown 11005.9
2123 Female, age 91, both hemispheres 8268.4
Medial olivary nucleus
nTPM: 16069.1
2851 Male, age 80, both hemispheres 42395.2
1962 Male, age 76, both hemispheres 9191.6
2138 Female, age 91, both hemispheres 8751.1
1943 Male, age 61, both hemispheres 3938.7
Medial parabrachial nucleus
nTPM: 18699.6
2854 Male, age 80, both hemispheres 29433.3
2786 Male, age 76, both hemispheres 25208.9
2156 Male, age 61, both hemispheres 21338.3
2170 Female, age 91, both hemispheres 14457.1
2463 Female, age 85, right hemisphere 3060.5
Medial periolivary nuclei
nTPM: 21244.5
2458 Female, age 91, both hemispheres 44762.5
2171 Female, age 85, both hemispheres 25906.2
2063 Male, age 76, both hemispheres 14956.0
2081 Male, age 80, both hemispheres 11938.9
2791 Male, age 74, right hemisphere 8658.9
Medial vestibular nucleus
nTPM: 24248.9
2624 Male, age 61, both hemispheres 41183.0
2134 Male, age 76, both hemispheres 29628.5
2803 Female, age 91, both hemispheres 25001.8
2801 Male, age 74, both hemispheres 21475.3
2093 Male, age 80, both hemispheres 16587.0
2743 Female, age 85, both hemispheres 11618.1
Motor facial nucleus
nTPM: 35901.0
2795 Female, age 91, both hemispheres 63069.8
2327 Male, age 80, both hemispheres 58166.9
2697 Female, age 85, both hemispheres 49682.4
2365 Male, age 74, right hemisphere 17343.9
2062 Male, age 76, both hemispheres 15638.3
2126 Male, age 61, both hemispheres 11504.6
Motor hypoglossal nucleus
nTPM: 29695.5
2461 Male, age 61, both hemispheres 63770.7
2182 Male, age 80, both hemispheres 34984.3
2132 Female, age 85, both hemispheres 28938.2
2125 Female, age 91, both hemispheres 11634.5
2277 Male, age 76, both hemispheres 9150.0
Motor trigeminal nucleus
nTPM: 26050.6
2321 Female, age 91, both hemispheres 43234.6
2309 Male, age 76, both hemispheres 29039.8
2335 Male, age 61, both hemispheres 23559.7
2560 Male, age 74, both hemispheres 17358.4
2079 Male, age 80, both hemispheres 17060.2
Nuclei of the trapezoid body
nTPM: 21870.1
2368 Female, age 91, both hemispheres 40759.9
2166 Male, age 80, both hemispheres 25527.5
1983 Male, age 76, both hemispheres 15719.9
2159 Male, age 61, both hemispheres 14868.9
2735 Female, age 85, both hemispheres 12474.5
Nucleus ambiguus
nTPM: 7268.1
2096 Female, age 85, both hemispheres 7892.9
2071 Male, age 76, both hemispheres 6643.2
Nucleus cuneatus
nTPM: 41124.1
2805 Female, age 91, both hemispheres 75161.0
2381 Male, age 80, both hemispheres 53582.0
2808 Female, age 85, both hemispheres 50361.6
2380 Male, age 80, both hemispheres 45132.5
2131 Male, age 76, both hemispheres 37265.6
2100 Male, age 76, both hemispheres 33196.9
2562 Male, age 61, both hemispheres 31482.5
2376 Male, age 61, both hemispheres 22024.7
2564 Male, age 74, both hemispheres 21909.9
Nucleus gracilis
nTPM: 44433.6
2299 Female, age 85, both hemispheres 64304.3
2382 Male, age 80, both hemispheres 50563.2
2627 Male, age 74, both hemispheres 18433.2
Nucleus raphe magnus
nTPM: 28404.6
2328 Male, age 80, both hemispheres 43802.8
2459 Female, age 91, both hemispheres 41536.5
2172 Female, age 85, both hemispheres 35011.7
2455 Male, age 74, both hemispheres 22548.3
2051 Male, age 76, both hemispheres 13790.9
2160 Male, age 61, both hemispheres 13737.5
Nucleus raphe obscurus
nTPM: 11905.6
2845 Female, age 85, midline 15431.9
2800 Male, age 61, midline 13619.3
2142 Male, age 76, midline 6665.5
Nucleus raphe pallidus
nTPM: 9776.0
2183 Male, age 80, midline 17591.6
2145 Male, age 76, midline 7948.5
1924 Male, age 61, midline 3787.9
Nucleus tractus solitarii
nTPM: 27644.7
2307 Male, age 80, both hemispheres 47038.8
2191 Female, age 85, both hemispheres 39294.7
2656 Male, age 76, both hemispheres 18199.3
2144 Female, age 91, right hemisphere 6045.8
Paramedian reticular nucleus
nTPM: 14494.0
2313 Male, age 61, both hemispheres 25289.9
2052 Male, age 76, both hemispheres 12140.6
2050 Female, age 85, both hemispheres 11634.4
2057 Male, age 80, both hemispheres 8911.0
Parvicellular reticular nuclei
nTPM: 18354.6
2095 Male, age 76, both hemispheres 23407.1
2558 Male, age 74, both hemispheres 19924.6
2119 Male, age 80, both hemispheres 11732.1
Parvicellular reticular nuclei, medullary
nTPM: 22157.0
2181 Male, age 80, left hemisphere 30460.0
2189 Female, age 91, both hemispheres 18502.9
2091 Female, age 85, both hemispheres 17508.0
Pedunculopontine tegmental nucleus
nTPM: 22414.0
2334 Male, age 80, both hemispheres 29021.9
2338 Male, age 61, both hemispheres 28711.3
1921 Female, age 85, both hemispheres 9508.8
Peritrigeminal nucleus
nTPM: 15106.4
2136 Male, age 76, both hemispheres 21176.3
2179 Male, age 61, both hemispheres 14532.7
2067 Female, age 85, both hemispheres 9610.2
Pontine nuclei
nTPM: 12990.9
2319 Female, age 91, both hemispheres 25739.3
2787 Female, age 85, both hemispheres 15972.8
2454 Male, age 74, left hemisphere 15613.4
2115 Male, age 80, left hemisphere 14171.0
1968 Male, age 76, left hemisphere 12686.1
1863 Male, age 55, unknown 8352.9
2109 Female, age 72, unknown 6838.7
2727 Male, age 61, right hemisphere 4553.4
Pontine raphe nucleus
nTPM: 20563.8
2853 Male, age 76, midline 27437.4
2122 Female, age 85, midline 13690.2
Posteroventral cochlear nucleus
nTPM: 16788.3
2341 Male, age 80, both hemispheres 24905.7
2371 Male, age 61, both hemispheres 24090.1
2752 Female, age 85, both hemispheres 13849.6
2070 Male, age 76, both hemispheres 11313.4
2135 Female, age 91, both hemispheres 9782.7
Prepositus hypoglossal nucleus
nTPM: 17556.8
2855 Female, age 85, right hemisphere 18381.3
2086 Male, age 80, both hemispheres 16732.3
Principal sensory trigeminal nucleus
nTPM: 34233.9
2324 Male, age 76, both hemispheres 70274.9
2367 Female, age 91, left hemisphere 43713.6
2158 Male, age 61, both hemispheres 14514.1
2008 Male, age 80, left hemisphere 8432.9
Reticular pontine nucleus, caudal
nTPM: 33387.6
2332 Male, age 80, right hemisphere 58991.9
2457 Female, age 91, both hemispheres 47049.7
2092 Male, age 76, both hemispheres 16047.2
2559 Male, age 74, both hemispheres 11461.5
Reticular pontine nucleus, oral
nTPM: 22928.5
2366 Female, age 91, both hemispheres 54310.9
2167 Male, age 76, both hemispheres 28969.2
2361 Male, age 74, both hemispheres 12052.3
1939 Male, age 80, both hemispheres 11886.8
2012 Female, age 85, both hemispheres 7423.5
Reticulotegmental nucleus
nTPM: 45442.9
2322 Female, age 91, both hemispheres 55149.5
2333 Male, age 80, both hemispheres 50415.3
2325 Male, age 76, both hemispheres 45287.6
2452 Male, age 74, both hemispheres 30919.1
Spinal trigeminal nucleus, caudal
nTPM: 32528.4
2308 Male, age 80, both hemispheres 44308.4
2390 Female, age 91, both hemispheres 42910.7
2447 Male, age 76, both hemispheres 31119.7
2312 Male, age 61, both hemispheres 22888.6
2642 Male, age 74, both hemispheres 21414.7
Spinal trigeminal nucleus, interpolar
nTPM: 23224.1
2389 Female, age 91, both hemispheres 39717.1
2625 Male, age 61, both hemispheres 36614.1
2066 Male, age 76, right hemisphere 16741.1
2386 Female, age 85, both hemispheres 13100.9
2033 Male, age 80, both hemispheres 9947.2
Spinal trigeminal nucleus, oral
nTPM: 27657.1
2164 Male, age 80, both hemispheres 50639.2
1978 Male, age 76, both hemispheres 20717.7
2737 Female, age 85, both hemispheres 11614.6
Spinal vestibular nucleus
nTPM: 21408.0
2796 Male, age 61, both hemispheres 35296.0
2806 Female, age 85, both hemispheres 26460.9
2748 Male, age 76, both hemispheres 19885.8
2186 Female, age 91, both hemispheres 18439.1
2384 Male, age 74, both hemispheres 14481.2
2780 Male, age 80, both hemispheres 13884.8
Subcoeruleus area
nTPM: 17875.1
2323 Female, age 91, left hemisphere 23658.3
2451 Male, age 74, both hemispheres 21333.0
2089 Male, age 76, left hemisphere 19388.2
1958 Male, age 80, both hemispheres 16311.8
2369 Female, age 85, left hemisphere 8684.2
Superior olive
nTPM: 23639.7
2329 Male, age 80, right hemisphere 47939.8
2561 Female, age 91, both hemispheres 41758.7
2020 Male, age 76, both hemispheres 10891.0
2364 Male, age 74, right hemisphere 9921.3
1875 Female, age 85, both hemispheres 7687.9
Superior vestibular nucleus
nTPM: 13141.3
2061 Male, age 76, both hemispheres 18943.1
2383 Male, age 74, both hemispheres 11005.8
2015 Male, age 80, both hemispheres 9475.1
Ventral medullary reticular nucleus
nTPM: 26222.2
2372 Male, age 61, both hemispheres 30795.9
2060 Male, age 76, both hemispheres 21648.5
Ventral periolivary nuclei
nTPM: 22474.4
2794 Female, age 91, left hemisphere 35271.0
2165 Male, age 80, both hemispheres 30683.3
2130 Female, age 85, both hemispheres 17503.6
2023 Male, age 76, both hemispheres 6439.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 19738.7
2302 Female, age 91, both hemispheres 32399.1
2180 Male, age 61, both hemispheres 21161.0
2118 Male, age 80, both hemispheres 17797.6
1986 Male, age 76, both hemispheres 15348.3
2741 Female, age 85, both hemispheres 11987.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 30185.9
2456 Female, age 91, both hemispheres 39376.6
2840 Female, age 85, both hemispheres 38193.2
2359 Male, age 61, both hemispheres 36240.5
2161 Male, age 80, both hemispheres 31016.1
2449 Male, age 74, both hemispheres 20091.6
1959 Male, age 76, both hemispheres 16197.5

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6888.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 5556.7
Samples: 4

Max nTPM: 8367.7
Min nTPM: 3334.4
Sample A Female 8367.7
Sample B Female 5233.7
Sample C Male 5290.8
Sample D Male 3334.4
Pons
nTPM: 6888.1
Samples: 4

Max nTPM: 9393.6
Min nTPM: 4880.3
Sample A Female 9393.6
Sample B Female 4880.3
Sample C Male 5993.1
Sample D Male 7285.2

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.8
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 136.8
Samples: 4

Max nTPM: 158.1
Min nTPM: 125.2
Sample A Male 134.9
Sample B Male 158.1
Sample C Female 125.2
Sample D Female 129.1

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