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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
127959.2
nTPM
HPA Brain:
48581.9
nTPM
GTEx:
127959.2
nTPM
Pig:
82615.9
nTPM
Mouse:
37114.0
nTPM
Allen mouse:
18.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA051505
Antibody HPA054758
Antibody CAB016243
Glial cells
Medium
Not detected
Medium
Neuronal cells
High
Medium
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48581.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 48581.9
2621
Female, age 67, right hemisphere
78764.7
2529
Female, age 94, left hemisphere
58009.4
1855
Male, age 76, left hemisphere
46416.2
2148
Female, age 91, left hemisphere
42745.8
1911
Female, age 85, right hemisphere
39092.9
1898
Male, age 80, left hemisphere
26462.6
Dentate gyrus nTPM: 39794.1
2530
Female, age 94, left hemisphere
66647.6
2531
Female, age 67, both hemispheres
66380.0
2246
Female, age 85, both hemispheres
40633.4
2010
Male, age 76, both hemispheres
23686.7
1927
Female, age 91, both hemispheres
22215.7
2528
Male, age 74, both hemispheres
19201.1
Entorhinal gyrus nTPM: 33654.7
2686
Male, age 75, right hemisphere
60053.5
2613
Female, age 94, left hemisphere
47750.3
1938
Female, age 85, left hemisphere
26268.6
2117
Female, age 91, right hemisphere
24694.0
1787
Male, age 76, left hemisphere
22952.0
2764
Male, age 80, right hemisphere
20209.9
Hippocampus, CA1 nTPM: 27936.7
2527
Male, age 74, both hemispheres
41600.2
2749
Male, age 80, left hemisphere
28890.4
2045
Male, age 76, both hemispheres
28055.3
1873
Female, age 85, both hemispheres
25618.7
2082
Female, age 91, right hemisphere
15518.8
Hippocampus, CA2 nTPM: 29466.4
2437
Female, age 94, left hemisphere
61283.5
1892
Male, age 76, both hemispheres
31054.7
1940
Female, age 85, left hemisphere
25559.0
2113
Female, age 91, right hemisphere
22160.3
1963
Male, age 80, left hemisphere
19183.0
2249
Male, age 74, both hemispheres
17558.1
Hippocampus, CA3 nTPM: 47237.9
2861
Female, age 67, both hemispheres
124894.2
2620
Female, age 94, left hemisphere
40690.0
2137
Male, age 80, left hemisphere
33640.7
1867
Male, age 76, both hemispheres
30275.0
2436
Male, age 74, both hemispheres
27916.3
1891
Female, age 85, both hemispheres
26011.1
Parahippocampal cortex nTPM: 38593.8
2622
Female, age 67, right hemisphere
65554.9
2245
Female, age 91, both hemispheres
63269.7
2692
Male, age 74, both hemispheres
53227.7
2532
Female, age 72, left hemisphere
45039.2
2250
Female, age 67, right hemisphere
34499.5
2693
Female, age 94, both hemispheres
32771.9
2018
Male, age 76, both hemispheres
31500.7
1933
Female, age 85, both hemispheres
22542.3
1850
Male, age 80, both hemispheres
20072.2
1990
Female, age 91, right hemisphere
17460.5
Perirhinal gyrus nTPM: 19978.2
2848
Male, age 76, right hemisphere
25834.1
2521
Female, age 94, right hemisphere
22746.8
1841
Female, age 85, right hemisphere
19952.3
1847
Female, age 91, left hemisphere
15790.0
1794
Male, age 80, right hemisphere
15567.7
Subiculum nTPM: 37731.2
2438
Female, age 94, left hemisphere
81687.6
2619
Male, age 74, both hemispheres
45260.3
2042
Male, age 76, both hemispheres
35397.1
1901
Male, age 80, both hemispheres
28363.5
1977
Female, age 85, both hemispheres
20828.8
2729
Female, age 91, right hemisphere
14849.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
127959.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 127959.2
Samples: 197
Max nTPM: 525200.5
Min nTPM: 12621.5
Std nTPM: 86863.6
Median nTPM: 105552.3
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37114.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 37114.0
Samples: 4
Max nTPM: 39682.1
Min nTPM: 32257.7
Sample A
Male
38329.5
Sample B
Male
32257.7
Sample C
Female
39682.1
Sample D
Female
38186.5
Hippocampal formation nTPM: 33161.2
Samples: 4
Max nTPM: 38401.6
Min nTPM: 28976.6
Sample A
Male
38401.6
Sample B
Male
32113.1
Sample C
Female
33153.6
Sample D
Female
28976.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
