We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
128885.0
nTPM
HPA Brain:
63565.7
nTPM
GTEx:
128885.0
nTPM
Pig:
72640.2
nTPM
Mouse:
30855.4
nTPM
Allen mouse:
22.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63565.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 51125.8
2586
Male, age 75, left hemisphere
83284.1
2219
Male, age 76, both hemispheres
75970.7
2828
Female, age 72, unknown
63049.2
2666
Male, age 74, left hemisphere
59439.7
1833
Male, age 53, unknown
49226.7
1870
Female, age 42, unknown
45949.4
1830
Male, age 51, unknown
43631.8
2019
Male, age 18, unknown
37170.4
1827
Male, age 72, unknown
32276.6
2411
Female, age 72, unknown
21259.0
Dorsal raphe nucleus nTPM: 31743.3
1828
Male, age 53, unknown
48161.9
2047
Male, age 72, unknown
36490.9
2750
Male, age 76, both hemispheres
32468.4
2016
Female, age 72, unknown
28078.3
2298
Female, age 72, unknown
13516.8
Inferior colliculus nTPM: 42467.5
2849
Male, age 72, unknown
63355.6
1890
Male, age 53, unknown
47636.4
1848
Female, age 42, unknown
37779.9
2097
Female, age 72, unknown
21098.1
Median raphe nucleus nTPM: 63565.7
2220
Male, age 76, midline
63565.7
Periaquaductal grey, anterior nTPM: 31471.1
2502
Female, age 75, unknown
38757.4
1795
Male, age 51, unknown
28744.0
1947
Male, age 18, unknown
26912.0
Periaquaductal grey, dorsal nTPM: 37588.5
2850
Male, age 76, both hemispheres
61152.4
1831
Male, age 72, unknown
35069.0
2464
Female, age 72, unknown
28569.3
1840
Male, age 53, unknown
25563.4
Periaquaductal grey, lateral nTPM: 26670.8
2140
Male, age 76, both hemispheres
31221.0
2053
Male, age 18, unknown
30485.5
2272
Male, age 74, both hemispheres
18305.8
Pretectal area nTPM: 44870.3
1944
Female, age 72, unknown
68884.1
1817
Female, age 42, unknown
68188.1
1816
Male, age 51, unknown
66715.9
2667
Female, age 75, unknown
63822.5
1815
Male, age 53, unknown
54173.6
2007
Male, age 72, unknown
53883.8
2825
Male, age 18, unknown
37246.1
2407
Male, age 75, both hemispheres
27859.1
2224
Female, age 72, unknown
20967.5
2316
Male, age 76, right hemisphere
16351.1
2273
Male, age 74, both hemispheres
15481.4
Red nucleus nTPM: 49817.5
2588
Male, age 74, left hemisphere
64203.7
2503
Female, age 72, unknown
60332.7
2584
Male, age 75, left hemisphere
56564.5
1954
Female, age 42, unknown
54095.4
2823
Male, age 76, right hemisphere
53670.9
2785
Male, age 18, unknown
53502.4
1865
Male, age 51, unknown
51880.5
2227
Male, age 72, unknown
44092.8
2769
Male, age 72, unknown
42770.7
1904
Male, age 53, unknown
42425.3
1821
Female, age 72, unknown
37215.7
2725
Female, age 75, unknown
37055.9
Substantia nigra nTPM: 58483.2
2665
Male, age 74, both hemispheres
135108.2
2699
Male, age 18, unknown
78469.9
1916
Female, age 42, unknown
70834.2
1889
Female, age 72, unknown
54686.8
1941
Male, age 53, unknown
48358.6
2583
Male, age 75, right hemisphere
45013.8
2241
Male, age 72, unknown
43586.6
1851
Male, age 51, unknown
38215.1
2409
Female, age 72, unknown
35842.7
2590
Female, age 75, unknown
34716.2
Superior colliculus nTPM: 40551.0
2664
Male, age 75, both hemispheres
62496.8
2087
Female, age 72, unknown
52938.7
2587
Male, age 74, left hemisphere
44506.0
1913
Female, age 42, unknown
40695.7
2668
Female, age 75, unknown
39428.9
1839
Male, age 51, unknown
34635.5
1895
Male, age 76, right hemisphere
33326.2
1995
Male, age 72, unknown
33241.4
2261
Male, age 18, unknown
32466.5
1796
Male, age 53, unknown
31774.4
Ventral tegmental area nTPM: 43764.4
2218
Male, age 76, both hemispheres
66433.6
2223
Female, age 72, unknown
47578.8
1942
Male, age 51, unknown
44083.1
1915
Female, age 42, unknown
39223.6
2021
Male, age 53, unknown
32662.3
2410
Female, age 72, unknown
32604.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
128885.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 128885.0
Samples: 139
Max nTPM: 423267.7
Min nTPM: 19284.2
Std nTPM: 78952.6
Median nTPM: 101282.1
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30855.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30855.4
Samples: 4
Max nTPM: 31951.9
Min nTPM: 29764.3
Sample A
Male
31951.9
Sample B
Male
30100.1
Sample C
Female
31605.3
Sample D
Female
29764.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
