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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:37142.8 nTPM
Pig:9071.6 nTPM
Allen mouse:20.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37142.8
Sample id Sample description nTPM
Area postrema
nTPM: 29564.7
2799 Male, age 61, both hemispheres 36372.4
2306 Male, age 80, both hemispheres 34278.1
2054 Male, age 76, both hemispheres 18043.7
Dorsal medullary reticular nucleus
nTPM: 20963.5
2373 Male, age 61, both hemispheres 24826.0
2088 Male, age 76, both hemispheres 24703.3
2040 Female, age 85, both hemispheres 13361.1
Dorsal motor vagal complex
nTPM: 30245.0
2797 Male, age 61, both hemispheres 63818.7
2807 Female, age 85, both hemispheres 43988.4
2185 Male, age 76, both hemispheres 32482.3
2643 Male, age 74, both hemispheres 29926.5
2813 Female, age 72, unknown 25179.2
2844 Male, age 55, unknown 18792.8
2133 Female, age 91, both hemispheres 16254.6
2000 Male, age 74, unknown 11517.8
Gigantocellular reticular nuclei, medullary
nTPM: 22484.3
2387 Female, age 91, both hemispheres 36160.2
2310 Male, age 80, both hemispheres 32828.5
2314 Male, age 61, both hemispheres 27341.3
2462 Male, age 74, both hemispheres 14943.9
2022 Male, age 76, right hemisphere 13742.8
1876 Female, age 85, both hemispheres 9889.0
Gigantocellular reticular nuclei, pars
nTPM: 31111.9
2330 Male, age 80, both hemispheres 49912.4
2706 Male, age 80, both hemispheres 48063.1
2336 Male, age 61, both hemispheres 24167.8
2084 Female, age 85, both hemispheres 18465.4
2168 Male, age 76, both hemispheres 14950.6
Inferior olive
nTPM: 26982.6
2628 Female, age 91, both hemispheres 52815.1
2379 Male, age 80, both hemispheres 32799.2
2178 Male, age 61, both hemispheres 19306.1
2085 Female, age 85, both hemispheres 18721.7
2563 Male, age 74, both hemispheres 11270.8
Lateral medullary reticular nucleus
nTPM: 18483.4
2374 Male, age 61, both hemispheres 34864.4
2804 Female, age 91, both hemispheres 28749.1
2190 Female, age 85, both hemispheres 19013.8
2044 Male, age 76, both hemispheres 14200.1
2852 Male, age 80, both hemispheres 8679.8
2305 Male, age 74, both hemispheres 5392.9
Medial olivary nucleus
nTPM: 13566.4
2851 Male, age 80, both hemispheres 30117.6
2138 Female, age 91, both hemispheres 9941.1
1962 Male, age 76, both hemispheres 8540.2
1943 Male, age 61, both hemispheres 5666.6
Medial vestibular nucleus
nTPM: 23260.0
2624 Male, age 61, both hemispheres 46913.1
2803 Female, age 91, both hemispheres 23612.1
2134 Male, age 76, both hemispheres 22547.6
2801 Male, age 74, both hemispheres 17410.6
2093 Male, age 80, both hemispheres 16812.7
2743 Female, age 85, both hemispheres 12264.2
Motor hypoglossal nucleus
nTPM: 22946.9
2461 Male, age 61, both hemispheres 44572.8
2132 Female, age 85, both hemispheres 23519.4
2182 Male, age 80, both hemispheres 22880.7
2125 Female, age 91, both hemispheres 13738.0
2277 Male, age 76, both hemispheres 10023.5
Nucleus ambiguus
nTPM: 7249.7
2071 Male, age 76, both hemispheres 8283.7
2096 Female, age 85, both hemispheres 6215.6
Nucleus cuneatus
nTPM: 37142.8
2805 Female, age 91, both hemispheres 76670.5
2381 Male, age 80, both hemispheres 41908.4
2131 Male, age 76, both hemispheres 38723.2
2808 Female, age 85, both hemispheres 37368.0
2380 Male, age 80, both hemispheres 34494.3
2100 Male, age 76, both hemispheres 32493.2
2562 Male, age 61, both hemispheres 31118.8
2376 Male, age 61, both hemispheres 20877.1
2564 Male, age 74, both hemispheres 20631.4
Nucleus gracilis
nTPM: 33835.8
2299 Female, age 85, both hemispheres 42595.9
2382 Male, age 80, both hemispheres 39747.8
2627 Male, age 74, both hemispheres 19163.7
Nucleus raphe obscurus
nTPM: 12460.0
2800 Male, age 61, midline 16185.9
2845 Female, age 85, midline 15282.5
2142 Male, age 76, midline 5911.5
Nucleus raphe pallidus
nTPM: 10794.1
2183 Male, age 80, midline 16171.1
2145 Male, age 76, midline 11455.1
1924 Male, age 61, midline 4756.1
Nucleus tractus solitarii
nTPM: 21244.7
2191 Female, age 85, both hemispheres 30089.4
2307 Male, age 80, both hemispheres 26274.1
2656 Male, age 76, both hemispheres 17328.3
2144 Female, age 91, right hemisphere 11287.0
Parvicellular reticular nuclei
nTPM: 15962.7
2558 Male, age 74, both hemispheres 20099.5
2095 Male, age 76, both hemispheres 16855.7
2119 Male, age 80, both hemispheres 10932.8
Parvicellular reticular nuclei, medullary
nTPM: 20302.2
2181 Male, age 80, left hemisphere 25806.7
2091 Female, age 85, both hemispheres 18177.8
2189 Female, age 91, both hemispheres 16922.1
Peritrigeminal nucleus
nTPM: 13030.3
2136 Male, age 76, both hemispheres 18782.8
2179 Male, age 61, both hemispheres 11461.9
2067 Female, age 85, both hemispheres 8846.1
Prepositus hypoglossal nucleus
nTPM: 19356.7
2855 Female, age 85, right hemisphere 21745.6
2086 Male, age 80, both hemispheres 16967.7
Spinal trigeminal nucleus, caudal
nTPM: 25641.8
2390 Female, age 91, both hemispheres 33863.2
2308 Male, age 80, both hemispheres 30194.3
2447 Male, age 76, both hemispheres 27136.6
2642 Male, age 74, both hemispheres 19587.7
2312 Male, age 61, both hemispheres 17427.2
Spinal trigeminal nucleus, interpolar
nTPM: 22102.3
2625 Male, age 61, both hemispheres 36225.4
2389 Female, age 91, both hemispheres 32561.3
2066 Male, age 76, right hemisphere 14982.1
2386 Female, age 85, both hemispheres 14246.9
2033 Male, age 80, both hemispheres 12495.9
Spinal vestibular nucleus
nTPM: 20352.9
2796 Male, age 61, both hemispheres 34984.8
2806 Female, age 85, both hemispheres 25179.5
2186 Female, age 91, both hemispheres 17307.5
2384 Male, age 74, both hemispheres 15920.7
2748 Male, age 76, both hemispheres 14879.3
2780 Male, age 80, both hemispheres 13845.6
Superior vestibular nucleus
nTPM: 11688.0
2061 Male, age 76, both hemispheres 14443.4
2015 Male, age 80, both hemispheres 10750.8
2383 Male, age 74, both hemispheres 9870.0
Ventral medullary reticular nucleus
nTPM: 20859.3
2372 Male, age 61, both hemispheres 25605.8
2060 Male, age 76, both hemispheres 16112.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 17111.3
2302 Female, age 91, both hemispheres 26294.4
2180 Male, age 61, both hemispheres 18401.1
2118 Male, age 80, both hemispheres 15621.2
1986 Male, age 76, both hemispheres 13489.5
2741 Female, age 85, both hemispheres 11750.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9071.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 9071.6
Samples: 4

Max nTPM: 9725.5
Min nTPM: 7244.6
Sample A Female 9725.5
Sample B Female 9628.0
Sample C Male 9688.2
Sample D Male 7244.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 20.8
74357767 Antisense, RP_051219_04_A06, Mouse strain C57BL/6J (56 days, male) 22.7
81600594 Antisense, RP_090205_01_D02, Mouse strain C57BL/6J (56 days, male) 18.9

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