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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
30513.2
nTPM
Pig:
10702.6
nTPM
Allen mouse:
19.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30513.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 21828.1
2301
Female, age 85, both hemispheres
35387.6
1984
Male, age 76, both hemispheres
19635.4
2188
Female, age 91, both hemispheres
19060.5
2090
Male, age 80, both hemispheres
13229.0
Dorsal cochlear nucleus nTPM: 26650.7
2378
Male, age 80, both hemispheres
43596.1
2802
Male, age 74, right hemisphere
27772.4
2058
Male, age 76, both hemispheres
22357.7
2370
Male, age 61, both hemispheres
20790.3
2187
Female, age 91, both hemispheres
18736.7
Dorsal tegmental nucleus nTPM: 21473.7
2358
Male, age 61, both hemispheres
38171.4
1936
Male, age 76, left hemisphere
17092.1
2083
Male, age 80, both hemispheres
17020.8
2326
Male, age 74, both hemispheres
13610.6
Dorsolateral tegmental area nTPM: 14346.8
2141
Male, age 76, both hemispheres
21292.2
2337
Male, age 61, both hemispheres
16544.6
2654
Male, age 80, both hemispheres
16296.4
2751
Female, age 85, both hemispheres
9891.3
2360
Male, age 74, both hemispheres
7709.6
Kolliker-Fuse nucleus nTPM: 21111.4
2793
Female, age 91, left hemisphere
37833.5
2163
Male, age 80, both hemispheres
18954.8
2315
Male, age 76, right hemisphere
6545.9
Lateral lemniscal nuclei nTPM: 18424.1
2320
Female, age 91, left hemisphere
28502.6
2453
Male, age 74, right hemisphere
23894.9
2169
Male, age 76, both hemispheres
19840.2
2036
Male, age 80, both hemispheres
13118.4
2746
Female, age 85, left hemisphere
6764.6
Lateral parabrachial nucleus nTPM: 12721.3
2790
Male, age 61, both hemispheres
16696.8
2792
Male, age 76, both hemispheres
15496.8
2139
Female, age 85, right hemisphere
10742.5
2013
Male, age 80, both hemispheres
7949.2
Lateral vestibular nucleus nTPM: 27616.5
2184
Male, age 76, both hemispheres
32126.6
2311
Male, age 80, both hemispheres
23106.4
Locus coeruleus nTPM: 20296.3
2720
Male, age 74, both hemispheres
40092.5
2162
Male, age 80, both hemispheres
26764.8
2788
Male, age 74, unknown
17804.0
1980
Male, age 76, both hemispheres
16853.9
2014
Male, age 55, unknown
14630.7
2317
Female, age 72, unknown
14456.8
2123
Female, age 91, both hemispheres
11471.3
Medial parabrachial nucleus nTPM: 17713.6
2854
Male, age 80, both hemispheres
27841.3
2786
Male, age 76, both hemispheres
22731.4
2156
Male, age 61, both hemispheres
18836.2
2170
Female, age 91, both hemispheres
12416.6
2463
Female, age 85, right hemisphere
6742.4
Medial periolivary nuclei nTPM: 17514.4
2458
Female, age 91, both hemispheres
33277.1
2171
Female, age 85, both hemispheres
21335.3
2063
Male, age 76, both hemispheres
12471.1
2081
Male, age 80, both hemispheres
11478.6
2791
Male, age 74, right hemisphere
9009.9
Motor facial nucleus nTPM: 30513.2
2795
Female, age 91, both hemispheres
57848.9
2327
Male, age 80, both hemispheres
43331.4
2697
Female, age 85, both hemispheres
42101.1
2126
Male, age 61, both hemispheres
13574.0
2365
Male, age 74, right hemisphere
13511.7
2062
Male, age 76, both hemispheres
12711.9
Motor trigeminal nucleus nTPM: 19863.9
2321
Female, age 91, both hemispheres
30146.8
2560
Male, age 74, both hemispheres
18878.1
2309
Male, age 76, both hemispheres
18099.7
2335
Male, age 61, both hemispheres
17270.3
2079
Male, age 80, both hemispheres
14924.4
Nuclei of the trapezoid body nTPM: 19193.1
2368
Female, age 91, both hemispheres
34568.8
2166
Male, age 80, both hemispheres
23298.0
1983
Male, age 76, both hemispheres
14250.4
2159
Male, age 61, both hemispheres
12185.6
2735
Female, age 85, both hemispheres
11662.9
Nucleus raphe magnus nTPM: 22136.1
2328
Male, age 80, both hemispheres
32866.4
2459
Female, age 91, both hemispheres
31091.8
2172
Female, age 85, both hemispheres
27223.4
2455
Male, age 74, both hemispheres
17371.5
2051
Male, age 76, both hemispheres
13216.6
2160
Male, age 61, both hemispheres
11046.9
Paramedian reticular nucleus nTPM: 14817.9
2313
Male, age 61, both hemispheres
19107.0
2052
Male, age 76, both hemispheres
15486.9
2050
Female, age 85, both hemispheres
14765.6
2057
Male, age 80, both hemispheres
9911.8
Pedunculopontine tegmental nucleus nTPM: 18488.2
2334
Male, age 80, both hemispheres
23812.5
2338
Male, age 61, both hemispheres
20410.8
1921
Female, age 85, both hemispheres
11241.2
Pontine nuclei nTPM: 12504.2
2319
Female, age 91, both hemispheres
20250.5
2787
Female, age 85, both hemispheres
17362.0
2115
Male, age 80, left hemisphere
14456.5
1863
Male, age 55, unknown
12881.6
2454
Male, age 74, left hemisphere
11905.8
1968
Male, age 76, left hemisphere
10425.8
2109
Female, age 72, unknown
7388.6
2727
Male, age 61, right hemisphere
5363.2
Pontine raphe nucleus nTPM: 16907.3
2853
Male, age 76, midline
20139.4
2122
Female, age 85, midline
13675.1
Posteroventral cochlear nucleus nTPM: 15735.0
2341
Male, age 80, both hemispheres
23203.2
2371
Male, age 61, both hemispheres
20721.4
2752
Female, age 85, both hemispheres
13781.2
2070
Male, age 76, both hemispheres
10774.7
2135
Female, age 91, both hemispheres
10194.4
Principal sensory trigeminal nucleus nTPM: 22362.9
2324
Male, age 76, both hemispheres
37627.7
2367
Female, age 91, left hemisphere
29482.2
2158
Male, age 61, both hemispheres
11743.9
2008
Male, age 80, left hemisphere
10597.6
Reticular pontine nucleus, caudal nTPM: 23247.9
2332
Male, age 80, right hemisphere
36175.7
2457
Female, age 91, both hemispheres
31601.2
2559
Male, age 74, both hemispheres
13147.4
2092
Male, age 76, both hemispheres
12067.1
Reticular pontine nucleus, oral nTPM: 17588.1
2366
Female, age 91, both hemispheres
37126.6
2167
Male, age 76, both hemispheres
20686.5
1939
Male, age 80, both hemispheres
10613.8
2361
Male, age 74, both hemispheres
10288.8
2012
Female, age 85, both hemispheres
9225.1
Reticulotegmental nucleus nTPM: 29994.0
2322
Female, age 91, both hemispheres
36306.5
2333
Male, age 80, both hemispheres
34824.2
2325
Male, age 76, both hemispheres
25799.0
2452
Male, age 74, both hemispheres
23046.5
Spinal trigeminal nucleus, oral nTPM: 22030.5
2164
Male, age 80, both hemispheres
36914.7
1978
Male, age 76, both hemispheres
17752.1
2737
Female, age 85, both hemispheres
11424.6
Subcoeruleus area nTPM: 14634.5
2323
Female, age 91, left hemisphere
17385.1
2451
Male, age 74, both hemispheres
17218.6
1958
Male, age 80, both hemispheres
15142.2
2089
Male, age 76, left hemisphere
13244.4
2369
Female, age 85, left hemisphere
10182.0
Superior olive nTPM: 20217.7
2561
Female, age 91, both hemispheres
39585.9
2329
Male, age 80, right hemisphere
33696.2
2020
Male, age 76, both hemispheres
10084.9
1875
Female, age 85, both hemispheres
9507.7
2364
Male, age 74, right hemisphere
8213.8
Ventral periolivary nuclei nTPM: 21496.8
2794
Female, age 91, left hemisphere
34134.6
2165
Male, age 80, both hemispheres
26827.2
2130
Female, age 85, both hemispheres
17303.6
2023
Male, age 76, both hemispheres
7721.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 23917.2
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10702.6
Pig sample
Sample description
nTPM
Pons nTPM: 10702.6
Samples: 4
Max nTPM: 12541.8
Min nTPM: 7819.3
Sample A
Female
11924.5
Sample B
Female
7819.3
Sample C
Male
10524.6
Sample D
Male
12541.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
