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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:748.5 nTPM
HPA Brain:275.3 nTPM
GTEx:748.5 nTPM
FANTOM5:17.3 Scaled Tags Per Million
Pig:294.4 nTPM
Mouse:155.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.3
Sample id Sample description nTPM
Amygdala
nTPM: 275.1
2695 Female, age 67, right hemisphere 329.0
2514 Male, age 75, right hemisphere 287.0
2517 Female, age 94, left hemisphere 282.6
1987 Female, age 91, left hemisphere 258.8
2814 Male, age 76, right hemisphere 218.4
Basal amygdala
nTPM: 240.2
2827 Female, age 67, right hemisphere 297.9
2609 Male, age 75, right hemisphere 274.2
2685 Female, age 94, left hemisphere 251.3
2110 Male, age 80, left hemisphere 245.0
2243 Female, age 91, right hemisphere 197.0
1955 Male, age 76, both hemispheres 175.6
Central amygdala
nTPM: 266.2
2826 Female, age 94, left hemisphere 407.0
2515 Male, age 75, right hemisphere 299.8
2239 Male, age 80, left hemisphere 230.4
2701 Female, age 91, right hemisphere 197.1
1905 Male, age 76, both hemispheres 196.8
Corticomedial amygdala
nTPM: 234.7
2428 Male, age 75, right hemisphere 267.6
2829 Male, age 80, left hemisphere 254.0
2429 Female, age 94, left hemisphere 243.7
2535 Female, age 67, right hemisphere 238.7
2242 Female, age 91, right hemisphere 224.4
2240 Male, age 76, both hemispheres 179.5
Lateral amygdala
nTPM: 275.3
2830 Female, age 67, right hemisphere 376.4
2516 Male, age 75, right hemisphere 345.2
2534 Female, age 94, left hemisphere 311.6
2256 Male, age 80, left hemisphere 233.3
2255 Female, age 91, right hemisphere 203.2
1883 Male, age 76, both hemispheres 182.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

748.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 748.5
Samples: 152

Max nTPM: 2465.9
Min nTPM: 411.8
Std nTPM: 300.8
Median nTPM: 680.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2465.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2203.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1705.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1674.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1622.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1524.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1418.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1238.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1213.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1185.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1159.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1150.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1080.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1066.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1057.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1052.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1025.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1003.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1002.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 991.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 971.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 962.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 933.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 931.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 919.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 903.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 899.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 898.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 882.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 878.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 876.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 866.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 864.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 860.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 855.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 853.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 835.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 833.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 812.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 806.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 805.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 801.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 797.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 784.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 784.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 784.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 781.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 777.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 777.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 776.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 773.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 768.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 764.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 744.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 729.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 726.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 721.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 721.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 718.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 717.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 713.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 713.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 712.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 712.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 707.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 706.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 706.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 704.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 704.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 703.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 698.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 694.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 693.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 690.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 687.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 682.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 679.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 678.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 676.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 674.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 671.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 671.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 670.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 662.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 658.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 657.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 654.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 653.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 650.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 649.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 648.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 642.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 635.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 631.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 628.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 616.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 613.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 609.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 603.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 602.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 600.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 599.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 598.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 595.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 591.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 589.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 589.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 581.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 578.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 577.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 573.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 569.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 564.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 561.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 559.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 559.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 558.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 556.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 554.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 553.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 552.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 551.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 549.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 542.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 538.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 534.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 525.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 520.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 512.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 512.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 508.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 504.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 503.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 502.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 498.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 498.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 493.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 490.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 487.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 481.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 481.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 479.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 474.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 471.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 466.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 462.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 458.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 453.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 433.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 430.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 423.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 411.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 17.3
FF:10151-102I7 76 years, female 17.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.4
Pig sample Sample description nTPM
Amygdala
nTPM: 294.4
Samples: 4

Max nTPM: 366.0
Min nTPM: 165.7
Sample A Female 336.6
Sample B Female 366.0
Sample C Male 309.2
Sample D Male 165.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 155.2
Samples: 4

Max nTPM: 170.7
Min nTPM: 141.8
Sample A Male 159.9
Sample B Male 148.3
Sample C Female 170.7
Sample D Female 141.8

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