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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:598.1 nTPM
HPA Brain:369.2 nTPM
GTEx:598.1 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:510.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

369.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 272.1
2565 Male, age 75, midline 351.4
1981 Female, age 72, midline 324.4
2194 Female, age 79, both hemispheres 233.9
2048 Male, age 55, midline 230.7
2816 Male, age 47, midline 220.4
Cervical spinal cord, dorsal horn
nTPM: 286.0
2173 Female, age 72, unknown 366.4
2069 Male, age 47, both hemispheres 364.7
2296 Male, age 66, both hemispheres 305.4
1877 Male, age 55, unknown 272.5
2297 Male, age 75, both hemispheres 204.6
2721 Male, age 90, both hemispheres 202.6
Cervical spinal cord, ventral horn
nTPM: 369.2
2480 Male, age 75, both hemispheres 544.2
2809 Male, age 90, both hemispheres 462.3
2098 Female, age 72, unknown 411.1
2295 Male, age 66, both hemispheres 341.9
2068 Male, age 55, unknown 279.6
2820 Female, age 79, both hemispheres 176.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

598.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 598.1
Samples: 159

Max nTPM: 1094.1
Min nTPM: 318.1
Std nTPM: 168.1
Median nTPM: 569.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1094.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1045.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1043.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1023.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1013.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 971.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 966.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 935.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 934.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 891.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 883.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 882.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 880.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 879.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 872.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 849.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 844.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 843.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 822.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 819.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 818.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 816.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 801.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 797.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 788.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 762.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 759.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 756.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 748.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 731.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 727.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 726.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 720.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 719.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 710.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 705.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 700.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 699.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 696.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 696.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 694.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 693.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 674.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 669.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 664.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 660.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 658.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 656.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 652.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 650.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 647.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 644.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 639.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 638.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 638.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 636.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 635.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 635.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 633.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 626.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 625.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 623.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 617.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 617.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 607.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 601.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 600.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 599.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 597.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 592.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 590.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 590.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 590.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 587.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 582.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 581.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 580.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 578.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 576.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 569.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 558.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 557.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 556.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 551.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 549.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 548.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 547.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 545.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 539.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 538.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 537.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 534.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 528.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 528.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 521.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 521.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 520.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 520.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 518.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 513.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 513.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 506.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 506.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 502.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 501.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 501.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 500.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 499.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 497.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 493.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 493.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 492.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 492.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 490.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 490.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 487.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 485.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 485.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 479.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 479.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 478.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 477.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 477.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 476.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 468.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 466.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 460.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 456.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 455.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 452.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 451.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 444.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 441.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 439.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 427.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 424.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 423.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 423.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 418.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 417.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 411.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 411.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 409.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 407.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 404.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 404.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 393.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 386.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 385.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 378.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 377.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 370.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 369.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 366.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 351.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 350.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 324.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 322.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 318.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 15.8
FF:10159-103A6 76 years, female 17.4
FF:10181-103D1 60 years, female 14.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

510.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 510.4
Samples: 4

Max nTPM: 787.2
Min nTPM: 346.8
Sample A Female 402.4
Sample B Female 505.2
Sample C Male 787.2
Sample D Male 346.8
Ventral spinal cord
nTPM: 441.3
Samples: 4

Max nTPM: 510.9
Min nTPM: 368.1
Sample A Female 368.1
Sample B Female 487.9
Sample C Male 510.9
Sample D Male 398.2

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