MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:652.7 nTPM
HPA Brain:260.5 nTPM
GTEx:652.7 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:447.7 nTPM
Mouse:138.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 260.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 237.0
2586 Male, age 75, left hemisphere 290.0
2411 Female, age 72, unknown 248.1
1870 Female, age 42, unknown 247.8
2666 Male, age 74, left hemisphere 245.8
1827 Male, age 72, unknown 237.7
2828 Female, age 72, unknown 237.6
2219 Male, age 76, both hemispheres 227.0
1830 Male, age 51, unknown 213.5
2019 Male, age 18, unknown 211.6
1833 Male, age 53, unknown 211.1
Dorsal raphe nucleus
nTPM: 239.2
2298 Female, age 72, unknown 284.2
2016 Female, age 72, unknown 245.7
2750 Male, age 76, both hemispheres 231.3
1828 Male, age 53, unknown 217.9
2047 Male, age 72, unknown 216.6
Inferior colliculus
nTPM: 235.1
2849 Male, age 72, unknown 246.6
2097 Female, age 72, unknown 239.0
1890 Male, age 53, unknown 237.2
1848 Female, age 42, unknown 217.4
Median raphe nucleus
nTPM: 217.9
2220 Male, age 76, midline 217.9
Periaquaductal grey, anterior
nTPM: 260.5
2502 Female, age 75, unknown 293.3
1947 Male, age 18, unknown 246.8
1795 Male, age 51, unknown 241.4
Periaquaductal grey, dorsal
nTPM: 232.4
1840 Male, age 53, unknown 283.0
2464 Female, age 72, unknown 232.1
1831 Male, age 72, unknown 220.0
2850 Male, age 76, both hemispheres 194.7
Periaquaductal grey, lateral
nTPM: 208.7
2053 Male, age 18, unknown 239.4
2272 Male, age 74, both hemispheres 199.5
2140 Male, age 76, both hemispheres 187.2
Pretectal area
nTPM: 218.7
2224 Female, age 72, unknown 244.4
2825 Male, age 18, unknown 242.9
2316 Male, age 76, right hemisphere 230.8
1815 Male, age 53, unknown 230.6
1816 Male, age 51, unknown 226.4
1817 Female, age 42, unknown 224.9
2007 Male, age 72, unknown 220.1
1944 Female, age 72, unknown 202.6
2667 Female, age 75, unknown 198.5
2407 Male, age 75, both hemispheres 193.4
2273 Male, age 74, both hemispheres 191.1
Red nucleus
nTPM: 239.7
2503 Female, age 72, unknown 311.0
1904 Male, age 53, unknown 263.5
2584 Male, age 75, left hemisphere 259.0
1821 Female, age 72, unknown 254.6
1865 Male, age 51, unknown 247.9
2725 Female, age 75, unknown 241.8
2227 Male, age 72, unknown 238.2
2769 Male, age 72, unknown 232.0
2588 Male, age 74, left hemisphere 224.2
1954 Female, age 42, unknown 211.0
2785 Male, age 18, unknown 205.8
2823 Male, age 76, right hemisphere 187.9
Substantia nigra
nTPM: 255.6
1851 Male, age 51, unknown 298.4
2665 Male, age 74, both hemispheres 296.5
2699 Male, age 18, unknown 279.1
2241 Male, age 72, unknown 264.4
2409 Female, age 72, unknown 254.9
2590 Female, age 75, unknown 250.5
1916 Female, age 42, unknown 244.7
2583 Male, age 75, right hemisphere 228.9
1889 Female, age 72, unknown 226.4
1941 Male, age 53, unknown 212.2
Superior colliculus
nTPM: 240.3
2587 Male, age 74, left hemisphere 273.6
1913 Female, age 42, unknown 260.3
1995 Male, age 72, unknown 253.7
1839 Male, age 51, unknown 241.8
1796 Male, age 53, unknown 239.5
2664 Male, age 75, both hemispheres 238.7
2668 Female, age 75, unknown 232.2
2261 Male, age 18, unknown 230.1
1895 Male, age 76, right hemisphere 224.6
2087 Female, age 72, unknown 208.9
Ventral tegmental area
nTPM: 255.0
1915 Female, age 42, unknown 286.8
2223 Female, age 72, unknown 271.4
2410 Female, age 72, unknown 262.3
2021 Male, age 53, unknown 255.3
1942 Male, age 51, unknown 235.2
2218 Male, age 76, both hemispheres 218.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 652.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 652.7
Samples: 139

Max nTPM: 1925.6
Min nTPM: 273.7
Std nTPM: 237.5
Median nTPM: 608.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1925.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1441.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1338.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1285.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1271.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1121.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1099.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1083.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1024.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1019.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1001.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 447.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 416.6
Samples: 4

Max nTPM: 596.1
Min nTPM: 280.8
Sample A Female 596.1
Sample B Female 449.3
Sample C Male 340.3
Sample D Male 280.8
Midbrain
nTPM: 399.1
Samples: 4

Max nTPM: 550.2
Min nTPM: 270.8
Sample A Female 550.2
Sample B Female 437.8
Sample C Male 337.4
Sample D Male 270.8
Periaqueductal gray
nTPM: 292.3
Samples: 3

Max nTPM: 316.3
Min nTPM: 256.7
Sample B Female 316.3
Sample C Male 304.0
Sample D Male 256.7
Superior colliculi
nTPM: 447.7
Samples: 4

Max nTPM: 559.4
Min nTPM: 319.7
Sample A Female 534.1
Sample B Female 559.4
Sample C Male 377.5
Sample D Male 319.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 138.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 138.7
Samples: 4

Max nTPM: 179.9
Min nTPM: 114.7
Sample A Male 179.9
Sample B Male 120.7
Sample C Female 114.7
Sample D Female 139.6

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