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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:9094.0 nTPM
HPA Brain:13179.4 nTPM
GTEx:9094.0 nTPM
Pig:9541.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13179.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 9171.7
2565 Male, age 75, midline 15932.7
2194 Female, age 79, both hemispheres 10275.1
2816 Male, age 47, midline 8303.5
2048 Male, age 55, midline 8191.0
1981 Female, age 72, midline 3156.0
Cervical spinal cord, dorsal horn
nTPM: 6188.2
2721 Male, age 90, both hemispheres 12510.8
2297 Male, age 75, both hemispheres 10227.5
1877 Male, age 55, unknown 6121.6
2069 Male, age 47, both hemispheres 3379.1
2173 Female, age 72, unknown 2518.0
2296 Male, age 66, both hemispheres 2372.1
Cervical spinal cord, ventral horn
nTPM: 13179.4
2480 Male, age 75, both hemispheres 25692.0
2820 Female, age 79, both hemispheres 19370.8
2295 Male, age 66, both hemispheres 12643.6
2809 Male, age 90, both hemispheres 9900.0
2068 Male, age 55, unknown 9766.0
2098 Female, age 72, unknown 1704.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9094.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9094.0
Samples: 159

Max nTPM: 60805.1
Min nTPM: 1353.0
Std nTPM: 9443.0
Median nTPM: 5943.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 60805.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 58699.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 50445.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 40433.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 32468.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 28358.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 28301.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 28146.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 26254.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 24517.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 24480.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 24252.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 21549.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 21462.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 20651.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 19403.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 18169.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 17035.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 16917.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 16134.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 16094.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 15783.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 14456.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 14456.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 14372.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 14089.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 14066.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 13897.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 13646.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 12869.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 12867.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 12862.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 12622.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 12465.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 12446.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 12164.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 11360.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 11304.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 11028.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 10662.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 10556.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 10505.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 10338.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 10220.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 10146.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 9376.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 9223.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 9079.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 8839.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 8804.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 8795.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 8489.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 8408.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 8260.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 8059.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 8028.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 7790.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 7679.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 7559.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 7280.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 7266.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7205.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 6964.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6890.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 6779.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 6721.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 6690.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 6678.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 6640.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 6538.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 6504.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 6458.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 6347.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 6302.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 6258.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 6239.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 6220.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 6101.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 6050.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 5943.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 5861.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 5833.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 5759.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 5737.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 5693.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5502.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 5458.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 5379.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 5340.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5233.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 5223.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 5127.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 5113.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 5035.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 4951.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 4917.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4900.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 4874.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 4866.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 4817.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 4772.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 4739.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 4665.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 4630.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4598.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 4580.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4575.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 4317.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 4043.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3904.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 3856.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3807.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3796.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3733.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3681.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 3638.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 3637.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 3567.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 3557.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 3543.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 3511.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 3510.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3505.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 3442.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3440.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 3438.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 3417.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3389.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3377.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3351.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3297.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 3231.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 3217.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 3216.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 3178.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3161.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3135.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 3129.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 3059.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2807.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2799.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2768.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2764.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2685.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2640.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2595.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2536.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2494.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2242.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 2211.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2170.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2057.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2025.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1952.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1883.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1849.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1813.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1768.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1353.0
Show allShow less

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9541.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 7555.6
Samples: 4

Max nTPM: 9246.5
Min nTPM: 5357.5
Sample A Female 9246.5
Sample B Female 8101.4
Sample C Male 5357.5
Sample D Male 7516.9
Ventral spinal cord
nTPM: 9541.4
Samples: 4

Max nTPM: 14263.9
Min nTPM: 5833.8
Sample A Female 14263.9
Sample B Female 5833.8
Sample C Male 9814.3
Sample D Male 8253.5

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