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  • HMGN2
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:114.0 nTPM
FANTOM5:46.0 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 114.0
2396 Male, age 61, right hemisphere 160.2
2032 Female, age 42, unknown 93.3
2497 Male, age 66, unknown 88.4
Centromedial thalamic nucleus
nTPM: 106.2
2401 Male, age 76, right hemisphere 108.4
2279 Female, age 85, left hemisphere 104.0
Habenula
nTPM: 84.2
1957 Male, age 80, both hemispheres 93.4
2252 Male, age 62, unknown 89.1
2203 Male, age 61, left hemisphere 83.1
2276 Male, age 66, unknown 71.0
Lateral geniculate body
nTPM: 101.2
2575 Female, age 94, right hemisphere 124.1
2841 Male, age 80, both hemispheres 108.5
1953 Male, age 62, unknown 104.8
2857 Male, age 74, right hemisphere 98.6
2659 Male, age 66, unknown 98.4
2399 Male, age 61, left hemisphere 93.4
2035 Female, age 72, unknown 92.1
2106 Female, age 67, right hemisphere 89.5
Lateral thalamic nuclei
nTPM: 98.7
2765 Female, age 67, both hemispheres 117.4
2573 Female, age 94, left hemisphere 113.3
1903 Male, age 76, left hemisphere 94.0
2661 Female, age 72, unknown 93.6
2577 Male, age 74, both hemispheres 75.0
Medial dorsal thalamic nucleus
nTPM: 95.0
2572 Female, age 94, right hemisphere 133.1
1859 Male, age 76, both hemispheres 103.9
1971 Male, age 61, right hemisphere 99.5
2402 Female, age 67, both hemispheres 99.2
2039 Female, age 72, unknown 97.2
2498 Male, age 66, unknown 90.8
1930 Female, age 42, unknown 90.7
2660 Female, age 72, unknown 90.7
2492 Male, age 75, right hemisphere 88.7
2283 Male, age 80, right hemisphere 87.6
2026 Male, age 62, unknown 87.3
2576 Male, age 74, both hemispheres 83.2
1810 Male, age 48, unknown 82.9
Medial geniculate body
nTPM: 99.6
2049 Male, age 76, both hemispheres 117.3
2650 Female, age 94, left hemisphere 112.5
2657 Male, age 74, right hemisphere 102.9
2571 Male, age 75, right hemisphere 93.5
1811 Female, age 42, unknown 92.4
2207 Male, age 80, right hemisphere 89.5
2217 Female, age 72, unknown 89.5
Nucleus reuniens
nTPM: 101.2
2210 Female, age 85, left hemisphere 105.5
2205 Male, age 80, left hemisphere 101.3
2212 Female, age 67, left hemisphere 96.8
Nucleus rhomboideus
nTPM: 92.0
2213 Female, age 67, left hemisphere 104.8
2280 Female, age 85, left hemisphere 88.9
2206 Male, age 80, both hemispheres 82.4
Posterior thalamic nucleus
nTPM: 110.1
2649 Female, age 94, both hemispheres 156.3
2266 Male, age 76, right hemisphere 99.3
2655 Male, age 74, right hemisphere 92.4
2495 Female, age 67, right hemisphere 92.3
Pulvinar
nTPM: 96.0
2499 Male, age 66, unknown 111.4
2214 Male, age 76, right hemisphere 99.8
2496 Female, age 67, right hemisphere 99.8
1972 Male, age 62, unknown 96.6
2398 Male, age 61, left hemisphere 95.9
1932 Male, age 80, right hemisphere 95.7
1929 Male, age 48, unknown 94.5
2724 Male, age 74, right hemisphere 93.7
1899 Female, age 42, unknown 86.4
2582 Female, age 72, unknown 85.9
Subthalamic nucleus
nTPM: 105.6
2056 Female, age 72, unknown 129.4
2124 Male, age 62, unknown 122.9
2216 Male, age 48, unknown 115.2
2282 Male, age 61, both hemispheres 108.3
2779 Female, age 42, unknown 97.7
2275 Male, age 66, unknown 94.3
2658 Male, age 74, both hemispheres 91.9
2406 Female, age 72, unknown 85.4
Ventral posterolateral thalamic nucleus
nTPM: 92.9
2397 Male, age 61, right hemisphere 107.6
2197 Male, age 80, both hemispheres 106.0
2740 Male, age 76, right hemisphere 97.7
2570 Male, age 75, right hemisphere 90.0
2581 Female, age 72, unknown 78.6
2578 Male, age 74, both hemispheres 77.4
Ventral posteromedial thalamic nucleus
nTPM: 95.4
2127 Male, age 76, right hemisphere 112.9
2758 Male, age 80, both hemispheres 97.6
2202 Male, age 61, left hemisphere 97.2
2281 Male, age 75, right hemisphere 92.8
2653 Male, age 74, both hemispheres 76.5
Ventral thalamic nuclei
nTPM: 98.3
2291 Female, age 72, unknown 114.3
1860 Male, age 76, both hemispheres 112.4
2580 Male, age 66, unknown 106.0
1845 Male, age 48, unknown 102.1
2285 Male, age 62, unknown 100.7
1912 Female, age 42, unknown 92.8
2204 Male, age 80, both hemispheres 90.3
2652 Male, age 74, left hemisphere 84.3
2858 Female, age 72, unknown 81.6
Zona incerta
nTPM: 99.1
2215 Male, age 66, unknown 110.9
2403 Male, age 62, unknown 109.8
2822 Male, age 74, right hemisphere 98.6
2208 Male, age 80, right hemisphere 91.4
2663 Female, age 72, unknown 84.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 46.0
FF:10154-103A1 76 years, female 46.0

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