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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
45569.0
nTPM
Pig:
27293.1
nTPM
Allen mouse:
0.0
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45569.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 28095.9
2301
Female, age 85, both hemispheres
53506.3
2188
Female, age 91, both hemispheres
28695.5
1984
Male, age 76, both hemispheres
16553.3
2090
Male, age 80, both hemispheres
13628.4
Dorsal cochlear nucleus nTPM: 30379.6
2378
Male, age 80, both hemispheres
47215.8
2802
Male, age 74, right hemisphere
37139.0
2187
Female, age 91, both hemispheres
26856.8
2370
Male, age 61, both hemispheres
20896.0
2058
Male, age 76, both hemispheres
19790.3
Dorsal tegmental nucleus nTPM: 27086.9
2358
Male, age 61, both hemispheres
46324.9
1936
Male, age 76, left hemisphere
24244.2
2083
Male, age 80, both hemispheres
20000.3
2326
Male, age 74, both hemispheres
17778.0
Dorsolateral tegmental area nTPM: 17222.7
2141
Male, age 76, both hemispheres
27714.0
2337
Male, age 61, both hemispheres
21037.0
2654
Male, age 80, both hemispheres
19130.2
2751
Female, age 85, both hemispheres
10141.9
2360
Male, age 74, both hemispheres
8090.7
Kolliker-Fuse nucleus nTPM: 30300.7
2793
Female, age 91, left hemisphere
55201.2
2163
Male, age 80, both hemispheres
28077.1
2315
Male, age 76, right hemisphere
7623.8
Lateral lemniscal nuclei nTPM: 22565.1
2320
Female, age 91, left hemisphere
34794.1
2169
Male, age 76, both hemispheres
30655.0
2453
Male, age 74, right hemisphere
28020.5
2036
Male, age 80, both hemispheres
13417.2
2746
Female, age 85, left hemisphere
5938.8
Lateral parabrachial nucleus nTPM: 16441.7
2792
Male, age 76, both hemispheres
25984.8
2790
Male, age 61, both hemispheres
19176.7
2139
Female, age 85, right hemisphere
11456.2
2013
Male, age 80, both hemispheres
9149.2
Lateral vestibular nucleus nTPM: 45569.0
2184
Male, age 76, both hemispheres
53137.8
2311
Male, age 80, both hemispheres
38000.2
Locus coeruleus nTPM: 24922.0
2720
Male, age 74, both hemispheres
56690.4
2162
Male, age 80, both hemispheres
32233.3
2788
Male, age 74, unknown
29359.9
2317
Female, age 72, unknown
17276.4
2014
Male, age 55, unknown
14779.2
1980
Male, age 76, both hemispheres
14460.2
2123
Female, age 91, both hemispheres
9654.5
Medial parabrachial nucleus nTPM: 24078.4
2854
Male, age 80, both hemispheres
47716.7
2786
Male, age 76, both hemispheres
28484.4
2156
Male, age 61, both hemispheres
22612.2
2170
Female, age 91, both hemispheres
17169.0
2463
Female, age 85, right hemisphere
4409.6
Medial periolivary nuclei nTPM: 21754.9
2458
Female, age 91, both hemispheres
50226.6
2171
Female, age 85, both hemispheres
27114.0
2063
Male, age 76, both hemispheres
11702.1
2081
Male, age 80, both hemispheres
11144.0
2791
Male, age 74, right hemisphere
8587.5
Motor facial nucleus nTPM: 41463.0
2795
Female, age 91, both hemispheres
77177.5
2697
Female, age 85, both hemispheres
74415.8
2327
Male, age 80, both hemispheres
58487.2
2365
Male, age 74, right hemisphere
14727.7
2126
Male, age 61, both hemispheres
12018.1
2062
Male, age 76, both hemispheres
11951.5
Motor trigeminal nucleus nTPM: 25487.5
2321
Female, age 91, both hemispheres
42745.0
2309
Male, age 76, both hemispheres
25190.4
2335
Male, age 61, both hemispheres
24092.3
2560
Male, age 74, both hemispheres
20077.2
2079
Male, age 80, both hemispheres
15332.4
Nuclei of the trapezoid body nTPM: 21015.7
2368
Female, age 91, both hemispheres
37875.4
2166
Male, age 80, both hemispheres
27875.6
1983
Male, age 76, both hemispheres
16991.3
2159
Male, age 61, both hemispheres
11844.7
2735
Female, age 85, both hemispheres
10491.7
Nucleus raphe magnus nTPM: 30046.2
2328
Male, age 80, both hemispheres
45988.8
2172
Female, age 85, both hemispheres
38898.0
2459
Female, age 91, both hemispheres
38074.2
2051
Male, age 76, both hemispheres
24016.9
2455
Male, age 74, both hemispheres
19695.9
2160
Male, age 61, both hemispheres
13603.2
Paramedian reticular nucleus nTPM: 19797.9
2052
Male, age 76, both hemispheres
24765.0
2313
Male, age 61, both hemispheres
24333.6
2050
Female, age 85, both hemispheres
22209.2
2057
Male, age 80, both hemispheres
7884.0
Pedunculopontine tegmental nucleus nTPM: 25293.0
2334
Male, age 80, both hemispheres
32171.5
2338
Male, age 61, both hemispheres
30022.3
1921
Female, age 85, both hemispheres
13685.2
Pontine nuclei nTPM: 13416.3
2319
Female, age 91, both hemispheres
26747.4
2787
Female, age 85, both hemispheres
17890.3
1863
Male, age 55, unknown
13959.4
2454
Male, age 74, left hemisphere
13916.3
2115
Male, age 80, left hemisphere
12241.0
1968
Male, age 76, left hemisphere
11662.9
2109
Female, age 72, unknown
6714.7
2727
Male, age 61, right hemisphere
4198.0
Pontine raphe nucleus nTPM: 21133.6
2853
Male, age 76, midline
28398.1
2122
Female, age 85, midline
13869.1
Posteroventral cochlear nucleus nTPM: 19075.1
2341
Male, age 80, both hemispheres
33790.4
2371
Male, age 61, both hemispheres
24883.0
2752
Female, age 85, both hemispheres
13537.5
2135
Female, age 91, both hemispheres
12630.7
2070
Male, age 76, both hemispheres
10534.1
Principal sensory trigeminal nucleus nTPM: 32474.7
2324
Male, age 76, both hemispheres
67635.9
2367
Female, age 91, left hemisphere
40391.7
2158
Male, age 61, both hemispheres
11941.5
2008
Male, age 80, left hemisphere
9929.9
Reticular pontine nucleus, caudal nTPM: 32677.7
2332
Male, age 80, right hemisphere
49143.2
2457
Female, age 91, both hemispheres
48110.9
2559
Male, age 74, both hemispheres
18382.1
2092
Male, age 76, both hemispheres
15074.8
Reticular pontine nucleus, oral nTPM: 24116.0
2366
Female, age 91, both hemispheres
53991.1
2167
Male, age 76, both hemispheres
32315.7
1939
Male, age 80, both hemispheres
15149.3
2361
Male, age 74, both hemispheres
9994.3
2012
Female, age 85, both hemispheres
9129.5
Reticulotegmental nucleus nTPM: 44569.6
2322
Female, age 91, both hemispheres
59216.2
2333
Male, age 80, both hemispheres
48715.1
2325
Male, age 76, both hemispheres
41118.9
2452
Male, age 74, both hemispheres
29228.1
Spinal trigeminal nucleus, oral nTPM: 30016.4
2164
Male, age 80, both hemispheres
59416.1
1978
Male, age 76, both hemispheres
18597.8
2737
Female, age 85, both hemispheres
12035.2
Subcoeruleus area nTPM: 18980.5
1958
Male, age 80, both hemispheres
24586.1
2323
Female, age 91, left hemisphere
23670.2
2451
Male, age 74, both hemispheres
20263.2
2089
Male, age 76, left hemisphere
15820.5
2369
Female, age 85, left hemisphere
10562.3
Superior olive nTPM: 24996.9
2561
Female, age 91, both hemispheres
53168.2
2329
Male, age 80, right hemisphere
41715.8
2020
Male, age 76, both hemispheres
12523.8
1875
Female, age 85, both hemispheres
9979.1
2364
Male, age 74, right hemisphere
7597.8
Ventral periolivary nuclei nTPM: 24989.0
2794
Female, age 91, left hemisphere
41818.7
2165
Male, age 80, both hemispheres
35137.9
2130
Female, age 85, both hemispheres
14688.3
2023
Male, age 76, both hemispheres
8311.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 32521.5
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27293.1
Pig sample
Sample description
nTPM
Pons nTPM: 27293.1
Samples: 4
Max nTPM: 36214.6
Min nTPM: 16376.1
Sample A
Female
26185.2
Sample B
Female
16376.1
Sample C
Male
30396.4
Sample D
Male
36214.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
