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  • MT-ND3
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:43207.5 nTPM
Pig:25031.1 nTPM
Mouse:6473.1 nTPM
Allen mouse:0.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43207.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 26289.8
2497 Male, age 66, unknown 35042.9
2032 Female, age 42, unknown 22771.5
2396 Male, age 61, right hemisphere 21055.0
Centromedial thalamic nucleus
nTPM: 28184.0
2401 Male, age 76, right hemisphere 28926.4
2279 Female, age 85, left hemisphere 27441.5
Habenula
nTPM: 16794.2
2276 Male, age 66, unknown 22867.2
1957 Male, age 80, both hemispheres 20311.9
2252 Male, age 62, unknown 12563.7
2203 Male, age 61, left hemisphere 11434.0
Lateral geniculate body
nTPM: 34370.1
2857 Male, age 74, right hemisphere 65261.9
2659 Male, age 66, unknown 57370.8
2399 Male, age 61, left hemisphere 36042.9
2575 Female, age 94, right hemisphere 35598.0
1953 Male, age 62, unknown 30352.1
2035 Female, age 72, unknown 22305.6
2841 Male, age 80, both hemispheres 18065.3
2106 Female, age 67, right hemisphere 9964.2
Lateral thalamic nuclei
nTPM: 36234.8
2661 Female, age 72, unknown 78393.2
1903 Male, age 76, left hemisphere 39767.3
2573 Female, age 94, left hemisphere 31494.5
2577 Male, age 74, both hemispheres 24955.0
2765 Female, age 67, both hemispheres 6564.2
Medial dorsal thalamic nucleus
nTPM: 30404.2
2572 Female, age 94, right hemisphere 65212.6
2660 Female, age 72, unknown 56380.9
2498 Male, age 66, unknown 36636.9
2576 Male, age 74, both hemispheres 35381.9
2492 Male, age 75, right hemisphere 32107.0
2283 Male, age 80, right hemisphere 30298.7
1859 Male, age 76, both hemispheres 27854.6
2026 Male, age 62, unknown 23803.3
2402 Female, age 67, both hemispheres 22432.3
1930 Female, age 42, unknown 20853.7
2039 Female, age 72, unknown 18738.1
1810 Male, age 48, unknown 18412.4
1971 Male, age 61, right hemisphere 7142.6
Medial geniculate body
nTPM: 41148.8
2207 Male, age 80, right hemisphere 56117.9
2571 Male, age 75, right hemisphere 49412.4
2657 Male, age 74, right hemisphere 44226.4
2650 Female, age 94, left hemisphere 43618.4
2217 Female, age 72, unknown 42751.4
2049 Male, age 76, both hemispheres 26495.3
1811 Female, age 42, unknown 25419.7
Nucleus reuniens
nTPM: 24943.0
2205 Male, age 80, left hemisphere 32468.2
2210 Female, age 85, left hemisphere 30884.9
2212 Female, age 67, left hemisphere 11475.8
Nucleus rhomboideus
nTPM: 30558.2
2280 Female, age 85, left hemisphere 45056.6
2206 Male, age 80, both hemispheres 33689.5
2213 Female, age 67, left hemisphere 12928.4
Posterior thalamic nucleus
nTPM: 43207.5
2655 Male, age 74, right hemisphere 64179.9
2649 Female, age 94, both hemispheres 48644.7
2495 Female, age 67, right hemisphere 44742.9
2266 Male, age 76, right hemisphere 15262.5
Pulvinar
nTPM: 36532.4
2724 Male, age 74, right hemisphere 91987.9
2582 Female, age 72, unknown 54154.4
2398 Male, age 61, left hemisphere 40469.8
2214 Male, age 76, right hemisphere 38007.8
2499 Male, age 66, unknown 30392.9
1929 Male, age 48, unknown 29170.6
2496 Female, age 67, right hemisphere 27229.5
1932 Male, age 80, right hemisphere 21002.0
1899 Female, age 42, unknown 19214.6
1972 Male, age 62, unknown 13694.0
Subthalamic nucleus
nTPM: 23541.2
2658 Male, age 74, both hemispheres 40672.2
2216 Male, age 48, unknown 35143.9
2282 Male, age 61, both hemispheres 26770.6
2779 Female, age 42, unknown 23858.3
2406 Female, age 72, unknown 22472.2
2124 Male, age 62, unknown 16352.7
2275 Male, age 66, unknown 13740.4
2056 Female, age 72, unknown 9319.2
Ventral posterolateral thalamic nucleus
nTPM: 34127.7
2581 Female, age 72, unknown 66615.9
2570 Male, age 75, right hemisphere 41577.1
2397 Male, age 61, right hemisphere 29500.5
2578 Male, age 74, both hemispheres 26740.2
2740 Male, age 76, right hemisphere 20192.9
2197 Male, age 80, both hemispheres 20139.9
Ventral posteromedial thalamic nucleus
nTPM: 22331.2
2653 Male, age 74, both hemispheres 31614.6
2281 Male, age 75, right hemisphere 20953.1
2127 Male, age 76, right hemisphere 20534.2
2758 Male, age 80, both hemispheres 20244.2
2202 Male, age 61, left hemisphere 18309.8
Ventral thalamic nuclei
nTPM: 33986.4
2858 Female, age 72, unknown 62166.9
2204 Male, age 80, both hemispheres 53820.9
2580 Male, age 66, unknown 40584.6
1845 Male, age 48, unknown 30062.8
1860 Male, age 76, both hemispheres 27000.1
2285 Male, age 62, unknown 26194.5
1912 Female, age 42, unknown 24808.5
2652 Male, age 74, left hemisphere 23882.3
2291 Female, age 72, unknown 17356.6
Zona incerta
nTPM: 30540.7
2663 Female, age 72, unknown 48744.5
2208 Male, age 80, right hemisphere 34814.3
2403 Male, age 62, unknown 34394.3
2822 Male, age 74, right hemisphere 26336.3
2215 Male, age 66, unknown 8414.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25031.1
Pig sample Sample description nTPM
Thalamus
nTPM: 25031.1
Samples: 4

Max nTPM: 34758.1
Min nTPM: 12935.8
Sample A Female 34314.7
Sample B Female 18115.8
Sample C Male 34758.1
Sample D Male 12935.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6473.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 6473.1
Samples: 4

Max nTPM: 8247.1
Min nTPM: 5542.9
Sample A Male 6431.7
Sample B Male 5542.9
Sample C Female 8247.1
Sample D Female 5670.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.0
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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