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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:50530.4 nTPM
Pig:27293.1 nTPM
Mouse:7023.3 nTPM
Allen mouse:0.2 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50530.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 28095.9
2301 Female, age 85, both hemispheres 53506.3
2188 Female, age 91, both hemispheres 28695.5
1984 Male, age 76, both hemispheres 16553.3
2090 Male, age 80, both hemispheres 13628.4
Area postrema
nTPM: 45993.6
2799 Male, age 61, both hemispheres 53180.0
2306 Male, age 80, both hemispheres 51552.0
2054 Male, age 76, both hemispheres 33248.9
Dorsal cochlear nucleus
nTPM: 30379.6
2378 Male, age 80, both hemispheres 47215.8
2802 Male, age 74, right hemisphere 37139.0
2187 Female, age 91, both hemispheres 26856.8
2370 Male, age 61, both hemispheres 20896.0
2058 Male, age 76, both hemispheres 19790.3
Dorsal medullary reticular nucleus
nTPM: 22655.1
2373 Male, age 61, both hemispheres 31075.7
2088 Male, age 76, both hemispheres 22707.9
2040 Female, age 85, both hemispheres 14181.8
Dorsal motor vagal complex
nTPM: 43790.1
2797 Male, age 61, both hemispheres 93690.1
2807 Female, age 85, both hemispheres 71351.8
2185 Male, age 76, both hemispheres 48068.5
2643 Male, age 74, both hemispheres 43361.6
2813 Female, age 72, unknown 39324.6
2844 Male, age 55, unknown 19857.4
2133 Female, age 91, both hemispheres 18829.2
2000 Male, age 74, unknown 15838.0
Dorsal tegmental nucleus
nTPM: 27086.9
2358 Male, age 61, both hemispheres 46324.9
1936 Male, age 76, left hemisphere 24244.2
2083 Male, age 80, both hemispheres 20000.3
2326 Male, age 74, both hemispheres 17778.0
Dorsolateral tegmental area
nTPM: 17222.7
2141 Male, age 76, both hemispheres 27714.0
2337 Male, age 61, both hemispheres 21037.0
2654 Male, age 80, both hemispheres 19130.2
2751 Female, age 85, both hemispheres 10141.9
2360 Male, age 74, both hemispheres 8090.7
Gigantocellular reticular nuclei, medullary
nTPM: 29516.2
2310 Male, age 80, both hemispheres 44566.6
2387 Female, age 91, both hemispheres 44324.7
2314 Male, age 61, both hemispheres 43640.3
2022 Male, age 76, right hemisphere 17930.8
2462 Male, age 74, both hemispheres 16015.5
1876 Female, age 85, both hemispheres 10619.5
Gigantocellular reticular nuclei, pars
nTPM: 47760.5
2330 Male, age 80, both hemispheres 81045.8
2706 Male, age 80, both hemispheres 80470.1
2336 Male, age 61, both hemispheres 34838.3
2168 Male, age 76, both hemispheres 22790.9
2084 Female, age 85, both hemispheres 19657.1
Inferior olive
nTPM: 42717.9
2628 Female, age 91, both hemispheres 92624.3
2379 Male, age 80, both hemispheres 50033.0
2178 Male, age 61, both hemispheres 27552.9
2085 Female, age 85, both hemispheres 27402.1
2563 Male, age 74, both hemispheres 15977.5
Kolliker-Fuse nucleus
nTPM: 30300.7
2793 Female, age 91, left hemisphere 55201.2
2163 Male, age 80, both hemispheres 28077.1
2315 Male, age 76, right hemisphere 7623.8
Lateral lemniscal nuclei
nTPM: 22565.1
2320 Female, age 91, left hemisphere 34794.1
2169 Male, age 76, both hemispheres 30655.0
2453 Male, age 74, right hemisphere 28020.5
2036 Male, age 80, both hemispheres 13417.2
2746 Female, age 85, left hemisphere 5938.8
Lateral medullary reticular nucleus
nTPM: 26646.2
2374 Male, age 61, both hemispheres 49149.6
2804 Female, age 91, both hemispheres 48610.6
2190 Female, age 85, both hemispheres 27811.0
2044 Male, age 76, both hemispheres 17481.2
2852 Male, age 80, both hemispheres 10277.2
2305 Male, age 74, both hemispheres 6547.7
Lateral parabrachial nucleus
nTPM: 16441.7
2792 Male, age 76, both hemispheres 25984.8
2790 Male, age 61, both hemispheres 19176.7
2139 Female, age 85, right hemisphere 11456.2
2013 Male, age 80, both hemispheres 9149.2
Lateral vestibular nucleus
nTPM: 45569.0
2184 Male, age 76, both hemispheres 53137.8
2311 Male, age 80, both hemispheres 38000.2
Locus coeruleus
nTPM: 24922.0
2720 Male, age 74, both hemispheres 56690.4
2162 Male, age 80, both hemispheres 32233.3
2788 Male, age 74, unknown 29359.9
2317 Female, age 72, unknown 17276.4
2014 Male, age 55, unknown 14779.2
1980 Male, age 76, both hemispheres 14460.2
2123 Female, age 91, both hemispheres 9654.5
Medial olivary nucleus
nTPM: 19319.1
2851 Male, age 80, both hemispheres 51688.2
2138 Female, age 91, both hemispheres 11091.5
1962 Male, age 76, both hemispheres 8117.6
1943 Male, age 61, both hemispheres 6379.1
Medial parabrachial nucleus
nTPM: 24078.4
2854 Male, age 80, both hemispheres 47716.7
2786 Male, age 76, both hemispheres 28484.4
2156 Male, age 61, both hemispheres 22612.2
2170 Female, age 91, both hemispheres 17169.0
2463 Female, age 85, right hemisphere 4409.6
Medial periolivary nuclei
nTPM: 21754.9
2458 Female, age 91, both hemispheres 50226.6
2171 Female, age 85, both hemispheres 27114.0
2063 Male, age 76, both hemispheres 11702.1
2081 Male, age 80, both hemispheres 11144.0
2791 Male, age 74, right hemisphere 8587.5
Medial vestibular nucleus
nTPM: 32898.4
2624 Male, age 61, both hemispheres 74139.4
2803 Female, age 91, both hemispheres 39594.0
2134 Male, age 76, both hemispheres 27801.8
2801 Male, age 74, both hemispheres 25514.8
2093 Male, age 80, both hemispheres 18753.4
2743 Female, age 85, both hemispheres 11587.1
Motor facial nucleus
nTPM: 41463.0
2795 Female, age 91, both hemispheres 77177.5
2697 Female, age 85, both hemispheres 74415.8
2327 Male, age 80, both hemispheres 58487.2
2365 Male, age 74, right hemisphere 14727.7
2126 Male, age 61, both hemispheres 12018.1
2062 Male, age 76, both hemispheres 11951.5
Motor hypoglossal nucleus
nTPM: 29975.9
2461 Male, age 61, both hemispheres 63639.1
2132 Female, age 85, both hemispheres 31792.8
2182 Male, age 80, both hemispheres 30786.2
2125 Female, age 91, both hemispheres 13752.7
2277 Male, age 76, both hemispheres 9908.6
Motor trigeminal nucleus
nTPM: 25487.5
2321 Female, age 91, both hemispheres 42745.0
2309 Male, age 76, both hemispheres 25190.4
2335 Male, age 61, both hemispheres 24092.3
2560 Male, age 74, both hemispheres 20077.2
2079 Male, age 80, both hemispheres 15332.4
Nuclei of the trapezoid body
nTPM: 21015.7
2368 Female, age 91, both hemispheres 37875.4
2166 Male, age 80, both hemispheres 27875.6
1983 Male, age 76, both hemispheres 16991.3
2159 Male, age 61, both hemispheres 11844.7
2735 Female, age 85, both hemispheres 10491.7
Nucleus ambiguus
nTPM: 6406.1
2071 Male, age 76, both hemispheres 7977.6
2096 Female, age 85, both hemispheres 4834.6
Nucleus cuneatus
nTPM: 49591.4
2805 Female, age 91, both hemispheres 114903.5
2808 Female, age 85, both hemispheres 63775.1
2381 Male, age 80, both hemispheres 63038.9
2562 Male, age 61, both hemispheres 43690.2
2380 Male, age 80, both hemispheres 42341.5
2131 Male, age 76, both hemispheres 35948.0
2100 Male, age 76, both hemispheres 32629.9
2376 Male, age 61, both hemispheres 25323.6
2564 Male, age 74, both hemispheres 24671.8
Nucleus gracilis
nTPM: 50530.4
2382 Male, age 80, both hemispheres 62833.6
2299 Female, age 85, both hemispheres 62030.9
2627 Male, age 74, both hemispheres 26726.8
Nucleus raphe magnus
nTPM: 30046.2
2328 Male, age 80, both hemispheres 45988.8
2172 Female, age 85, both hemispheres 38898.0
2459 Female, age 91, both hemispheres 38074.2
2051 Male, age 76, both hemispheres 24016.9
2455 Male, age 74, both hemispheres 19695.9
2160 Male, age 61, both hemispheres 13603.2
Nucleus raphe obscurus
nTPM: 17535.2
2845 Female, age 85, midline 25738.4
2800 Male, age 61, midline 20682.9
2142 Male, age 76, midline 6184.3
Nucleus raphe pallidus
nTPM: 12383.3
2183 Male, age 80, midline 20846.6
2145 Male, age 76, midline 10820.4
1924 Male, age 61, midline 5482.7
Nucleus tractus solitarii
nTPM: 29001.6
2191 Female, age 85, both hemispheres 45922.7
2307 Male, age 80, both hemispheres 37764.7
2656 Male, age 76, both hemispheres 20395.2
2144 Female, age 91, right hemisphere 11923.7
Paramedian reticular nucleus
nTPM: 19797.9
2052 Male, age 76, both hemispheres 24765.0
2313 Male, age 61, both hemispheres 24333.6
2050 Female, age 85, both hemispheres 22209.2
2057 Male, age 80, both hemispheres 7884.0
Parvicellular reticular nuclei
nTPM: 18430.8
2095 Male, age 76, both hemispheres 21864.3
2558 Male, age 74, both hemispheres 21728.3
2119 Male, age 80, both hemispheres 11699.8
Parvicellular reticular nuclei, medullary
nTPM: 27756.2
2181 Male, age 80, left hemisphere 40156.4
2189 Female, age 91, both hemispheres 24509.3
2091 Female, age 85, both hemispheres 18603.0
Pedunculopontine tegmental nucleus
nTPM: 25293.0
2334 Male, age 80, both hemispheres 32171.5
2338 Male, age 61, both hemispheres 30022.3
1921 Female, age 85, both hemispheres 13685.2
Peritrigeminal nucleus
nTPM: 13828.5
2136 Male, age 76, both hemispheres 18826.2
2179 Male, age 61, both hemispheres 14094.6
2067 Female, age 85, both hemispheres 8564.6
Pontine nuclei
nTPM: 13416.3
2319 Female, age 91, both hemispheres 26747.4
2787 Female, age 85, both hemispheres 17890.3
1863 Male, age 55, unknown 13959.4
2454 Male, age 74, left hemisphere 13916.3
2115 Male, age 80, left hemisphere 12241.0
1968 Male, age 76, left hemisphere 11662.9
2109 Female, age 72, unknown 6714.7
2727 Male, age 61, right hemisphere 4198.0
Pontine raphe nucleus
nTPM: 21133.6
2853 Male, age 76, midline 28398.1
2122 Female, age 85, midline 13869.1
Posteroventral cochlear nucleus
nTPM: 19075.1
2341 Male, age 80, both hemispheres 33790.4
2371 Male, age 61, both hemispheres 24883.0
2752 Female, age 85, both hemispheres 13537.5
2135 Female, age 91, both hemispheres 12630.7
2070 Male, age 76, both hemispheres 10534.1
Prepositus hypoglossal nucleus
nTPM: 24433.2
2855 Female, age 85, right hemisphere 32165.4
2086 Male, age 80, both hemispheres 16701.1
Principal sensory trigeminal nucleus
nTPM: 32474.7
2324 Male, age 76, both hemispheres 67635.9
2367 Female, age 91, left hemisphere 40391.7
2158 Male, age 61, both hemispheres 11941.5
2008 Male, age 80, left hemisphere 9929.9
Reticular pontine nucleus, caudal
nTPM: 32677.7
2332 Male, age 80, right hemisphere 49143.2
2457 Female, age 91, both hemispheres 48110.9
2559 Male, age 74, both hemispheres 18382.1
2092 Male, age 76, both hemispheres 15074.8
Reticular pontine nucleus, oral
nTPM: 24116.0
2366 Female, age 91, both hemispheres 53991.1
2167 Male, age 76, both hemispheres 32315.7
1939 Male, age 80, both hemispheres 15149.3
2361 Male, age 74, both hemispheres 9994.3
2012 Female, age 85, both hemispheres 9129.5
Reticulotegmental nucleus
nTPM: 44569.6
2322 Female, age 91, both hemispheres 59216.2
2333 Male, age 80, both hemispheres 48715.1
2325 Male, age 76, both hemispheres 41118.9
2452 Male, age 74, both hemispheres 29228.1
Spinal trigeminal nucleus, caudal
nTPM: 35727.8
2390 Female, age 91, both hemispheres 57937.1
2308 Male, age 80, both hemispheres 42892.5
2642 Male, age 74, both hemispheres 28865.1
2447 Male, age 76, both hemispheres 25858.3
2312 Male, age 61, both hemispheres 23086.1
Spinal trigeminal nucleus, interpolar
nTPM: 31089.2
2625 Male, age 61, both hemispheres 59780.4
2389 Female, age 91, both hemispheres 51386.8
2386 Female, age 85, both hemispheres 16584.2
2033 Male, age 80, both hemispheres 14715.7
2066 Male, age 76, right hemisphere 12978.9
Spinal trigeminal nucleus, oral
nTPM: 30016.4
2164 Male, age 80, both hemispheres 59416.1
1978 Male, age 76, both hemispheres 18597.8
2737 Female, age 85, both hemispheres 12035.2
Spinal vestibular nucleus
nTPM: 27836.3
2796 Male, age 61, both hemispheres 54722.2
2806 Female, age 85, both hemispheres 38516.8
2186 Female, age 91, both hemispheres 24105.3
2384 Male, age 74, both hemispheres 17230.6
2780 Male, age 80, both hemispheres 16496.9
2748 Male, age 76, both hemispheres 15946.2
Subcoeruleus area
nTPM: 18980.5
1958 Male, age 80, both hemispheres 24586.1
2323 Female, age 91, left hemisphere 23670.2
2451 Male, age 74, both hemispheres 20263.2
2089 Male, age 76, left hemisphere 15820.5
2369 Female, age 85, left hemisphere 10562.3
Superior olive
nTPM: 24996.9
2561 Female, age 91, both hemispheres 53168.2
2329 Male, age 80, right hemisphere 41715.8
2020 Male, age 76, both hemispheres 12523.8
1875 Female, age 85, both hemispheres 9979.1
2364 Male, age 74, right hemisphere 7597.8
Superior vestibular nucleus
nTPM: 13810.6
2383 Male, age 74, both hemispheres 13976.3
2015 Male, age 80, both hemispheres 13785.3
2061 Male, age 76, both hemispheres 13670.2
Ventral medullary reticular nucleus
nTPM: 22282.1
2372 Male, age 61, both hemispheres 29070.2
2060 Male, age 76, both hemispheres 15494.0
Ventral periolivary nuclei
nTPM: 24989.0
2794 Female, age 91, left hemisphere 41818.7
2165 Male, age 80, both hemispheres 35137.9
2130 Female, age 85, both hemispheres 14688.3
2023 Male, age 76, both hemispheres 8311.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 20855.9
2302 Female, age 91, both hemispheres 35839.7
2180 Male, age 61, both hemispheres 27651.3
2118 Male, age 80, both hemispheres 16089.0
1986 Male, age 76, both hemispheres 12451.6
2741 Female, age 85, both hemispheres 12247.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 32521.5
2840 Female, age 85, both hemispheres 53123.6
2456 Female, age 91, both hemispheres 37077.6
2359 Male, age 61, both hemispheres 30760.7
2161 Male, age 80, both hemispheres 30603.2
1959 Male, age 76, both hemispheres 24320.2
2449 Male, age 74, both hemispheres 19243.4

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27293.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 23351.3
Samples: 4

Max nTPM: 26456.6
Min nTPM: 18030.4
Sample A Female 26456.6
Sample B Female 23339.5
Sample C Male 25578.7
Sample D Male 18030.4
Pons
nTPM: 27293.1
Samples: 4

Max nTPM: 36214.6
Min nTPM: 16376.1
Sample A Female 26185.2
Sample B Female 16376.1
Sample C Male 30396.4
Sample D Male 36214.6

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7023.3
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 7023.4
Samples: 4

Max nTPM: 8622.7
Min nTPM: 5140.8
Sample A Male 6747.4
Sample B Male 5140.8
Sample C Female 8622.7
Sample D Female 7582.5

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.2
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.2
Pons
Expression energy: 0.0
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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