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MT-ND3
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  • MT-ND3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:21186.3 nTPM
HPA:8768.1 nTPM
GTEx:21186.3 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA063296
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Not detected
Goblet cells High

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8768.1
overview
Male, age 65
Small intestine sample 232
nTPM: 11447.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 9480
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 6323.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 7821.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21186.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 21186.3
Samples: 187

Max nTPM: 72413.0
Min nTPM: 3862.1
Std nTPM: 11442.5
Median nTPM: 19174.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 72413.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 71336.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 58120.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 56224.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 55540.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 54093.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 50905.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 48857.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 42313.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 41692.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 41489.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 39384.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 36466.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 35972.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 35688.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 34649.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 34453.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 34029.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 34020.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 33996.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 33809.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 32136.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 32076.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 31970.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 31722.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 31064.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 30832.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 30447.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 30433.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 30423.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 29469.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 29418.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 29413.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 29398.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 29214.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 28380.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 28126.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 28082.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 27950.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 27868.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 27612.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 27441.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 26933.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 26915.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 26848.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 26747.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 26390.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 25743.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 25661.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 25655.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 25389.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 25316.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 25249.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 24969.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 24720.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 24630.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 24564.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 24500.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 23992.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 23944.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 23267.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 23245.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 23183.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 23131.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 23048.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 22986.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 22848.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 22594.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 22546.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 22355.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 22214.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 22186.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 21792.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 21593.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 21509.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 21499.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 21340.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 21312.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 21040.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 20726.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 20687.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 20636.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 20597.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 20356.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 20310.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 20034.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 19943.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 19833.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 19601.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 19500.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 19445.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 19414.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 19241.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 19174.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 19068.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 18643.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 18585.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 18420.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 18378.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 18271.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 17989.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 17757.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 17668.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 17658.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 17495.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 17340.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 17261.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 16887.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 16839.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 16821.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 16704.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 16697.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 16694.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 16665.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 16614.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 16469.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 16301.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 16138.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 16064.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 16031.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 16000.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 15869.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 15814.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 15748.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 15696.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 15604.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 15499.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 15413.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 15264.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 15098.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 14919.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 14898.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 14812.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 14796.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 14537.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 14533.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 14151.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 13971.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 13891.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 13672.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 13500.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 13200.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 12922.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 12848.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 12821.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 12788.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 12736.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 12656.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 12604.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 12602.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 12382.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 12227.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 12062.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 11976.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 11963.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 11811.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 11735.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 11404.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 11217.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 10794.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 10779.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 10749.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 10262.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 10217.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 10039.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 9950.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 9799.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 9698.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 9585.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 9213.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 8987.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 8930.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 8635.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 8500.8
GTEX-1192X-2526-SM-59868 50-59 years, male 7949.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 7778.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 7651.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 7444.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 6600.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 6401.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 6067.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 5960.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 5473.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 5308.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5248.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 4502.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3862.1
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