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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:51599.0 nTPM
HPA Brain:15828.9 nTPM
GTEx:51599.0 nTPM
Pig:22924.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15828.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 12715.6
2565 Male, age 75, midline 22596.8
2194 Female, age 79, both hemispheres 14676.3
2048 Male, age 55, midline 11995.9
2816 Male, age 47, midline 10418.0
1981 Female, age 72, midline 3890.8
Cervical spinal cord, dorsal horn
nTPM: 7655.8
2721 Male, age 90, both hemispheres 16325.8
2297 Male, age 75, both hemispheres 11774.7
1877 Male, age 55, unknown 7870.4
2069 Male, age 47, both hemispheres 3792.5
2173 Female, age 72, unknown 3313.9
2296 Male, age 66, both hemispheres 2857.7
Cervical spinal cord, ventral horn
nTPM: 15828.9
2480 Male, age 75, both hemispheres 32653.4
2820 Female, age 79, both hemispheres 25625.2
2809 Male, age 90, both hemispheres 12002.5
2068 Male, age 55, unknown 11926.4
2295 Male, age 66, both hemispheres 11076.2
2098 Female, age 72, unknown 1689.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51599.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 51599.0
Samples: 159

Max nTPM: 312014.1
Min nTPM: 11434.0
Std nTPM: 45643.1
Median nTPM: 36879.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 312014.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 268519.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 189741.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 181284.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 180880.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 158465.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 156054.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 145943.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 145452.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 137574.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 129368.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117745.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 114980.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 112235.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 111850.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 102209.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 101724.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 97522.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 96896.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 94827.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93831.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 92755.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 87540.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 86045.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 85979.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 85700.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 79583.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 76136.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 74913.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 74801.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 73775.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 73477.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 70443.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 69317.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 69260.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 69112.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 68387.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 66712.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 65862.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 65693.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 64244.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 61550.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 58498.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 58353.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 56772.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 56468.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 55804.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 55786.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 55333.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 53116.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 52895.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 52704.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 52265.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 51833.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 48711.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 48651.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 48197.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 45816.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 45112.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 45109.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 44634.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 43876.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 43437.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 42126.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 41186.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 41151.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 40692.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 40242.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 39869.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 39755.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 39558.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 39081.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 38661.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 38622.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 37880.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 37397.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 37290.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 37039.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 36928.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 36879.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 36347.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 36108.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 36100.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 35141.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 35046.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 34909.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 34869.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 34121.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 33345.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 32268.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 31953.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 31310.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 31262.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 30743.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 30222.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 30217.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 29949.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 29696.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 28893.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 28379.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 27748.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 27640.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 27308.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 27083.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 26975.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 26961.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 26950.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 26477.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 25559.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 25455.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 25448.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 25257.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 25216.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 25165.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 25120.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 24666.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 24537.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 23853.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 23824.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 23607.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 23476.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 23126.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 23094.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 22895.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 22768.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 22549.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 22114.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 21833.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 21392.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 20321.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 19186.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 19069.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 18886.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 18714.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 18586.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 18275.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 18071.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 17673.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 17515.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 17350.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 17277.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 17000.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 16877.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 16767.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 16697.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 16563.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 16144.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 15468.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 15338.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 15203.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 14933.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 14691.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 14303.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 14216.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 12953.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 12905.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 12788.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 11871.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 11434.0
Show allShow less

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22924.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 19049.0
Samples: 4

Max nTPM: 23745.9
Min nTPM: 14486.9
Sample A Female 23745.9
Sample B Female 19741.8
Sample C Male 14486.9
Sample D Male 18221.4
Ventral spinal cord
nTPM: 22924.5
Samples: 4

Max nTPM: 36388.1
Min nTPM: 10019.6
Sample A Female 36388.1
Sample B Female 10019.6
Sample C Male 28512.0
Sample D Male 16778.1

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