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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
85300.1
nTPM
HPA Brain:
54403.3
nTPM
GTEx:
85300.1
nTPM
Pig:
15902.1
nTPM
Mouse:
14859.6
nTPM
Allen mouse:
8.7
Expression energy
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54403.3
Sample id
Sample description
nTPM
Amygdala nTPM: 48032.8
2695
Female, age 67, right hemisphere
94038.5
2814
Male, age 76, right hemisphere
49579.7
2514
Male, age 75, right hemisphere
41837.0
2517
Female, age 94, left hemisphere
39477.6
1987
Female, age 91, left hemisphere
15231.5
Basal amygdala nTPM: 51967.8
2827
Female, age 67, right hemisphere
98328.2
2609
Male, age 75, right hemisphere
60377.7
1955
Male, age 76, both hemispheres
45921.9
2685
Female, age 94, left hemisphere
42578.2
2243
Female, age 91, right hemisphere
40686.0
2110
Male, age 80, left hemisphere
23914.9
Central amygdala nTPM: 52905.8
2826
Female, age 94, left hemisphere
80272.4
2701
Female, age 91, right hemisphere
51611.8
2239
Male, age 80, left hemisphere
45480.7
1905
Male, age 76, both hemispheres
43843.2
2515
Male, age 75, right hemisphere
43321.2
Corticomedial amygdala nTPM: 47041.9
2535
Female, age 67, right hemisphere
80648.0
2240
Male, age 76, both hemispheres
66864.6
2428
Male, age 75, right hemisphere
41293.2
2242
Female, age 91, right hemisphere
39746.8
2829
Male, age 80, left hemisphere
29683.8
2429
Female, age 94, left hemisphere
24015.0
Lateral amygdala nTPM: 54403.3
2830
Female, age 67, right hemisphere
102039.0
2534
Female, age 94, left hemisphere
53365.9
2516
Male, age 75, right hemisphere
48603.9
2256
Male, age 80, left hemisphere
47463.4
2255
Female, age 91, right hemisphere
40021.9
1883
Male, age 76, both hemispheres
34925.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85300.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 85300.1
Samples: 152
Max nTPM: 354322.9
Min nTPM: 2057.2
Std nTPM: 60040.2
Median nTPM: 66559.0
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14859.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 14859.6
Samples: 4
Max nTPM: 17505.1
Min nTPM: 11806.3
Sample A
Male
11806.3
Sample B
Male
14709.5
Sample C
Female
17505.1
Sample D
Female
15417.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
