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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
77413.1
nTPM
Pig:
9565.0
nTPM
Allen mouse:
5.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77413.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 54070.8
2301
Female, age 85, both hemispheres
109805.5
2188
Female, age 91, both hemispheres
41543.0
1984
Male, age 76, both hemispheres
35846.1
2090
Male, age 80, both hemispheres
29088.4
Dorsal cochlear nucleus nTPM: 56995.0
2378
Male, age 80, both hemispheres
93559.6
2802
Male, age 74, right hemisphere
65603.1
2187
Female, age 91, both hemispheres
44558.6
2058
Male, age 76, both hemispheres
41003.2
2370
Male, age 61, both hemispheres
40250.3
Dorsal tegmental nucleus nTPM: 49765.1
2358
Male, age 61, both hemispheres
85771.4
1936
Male, age 76, left hemisphere
39449.4
2083
Male, age 80, both hemispheres
39136.4
2326
Male, age 74, both hemispheres
34703.0
Dorsolateral tegmental area nTPM: 33161.3
2141
Male, age 76, both hemispheres
51753.2
2337
Male, age 61, both hemispheres
44552.3
2654
Male, age 80, both hemispheres
33274.0
2751
Female, age 85, both hemispheres
19046.9
2360
Male, age 74, both hemispheres
17180.1
Kolliker-Fuse nucleus nTPM: 48088.9
2793
Female, age 91, left hemisphere
82126.7
2163
Male, age 80, both hemispheres
45929.1
2315
Male, age 76, right hemisphere
16210.8
Lateral lemniscal nuclei nTPM: 43729.7
2320
Female, age 91, left hemisphere
73704.9
2169
Male, age 76, both hemispheres
53274.4
2453
Male, age 74, right hemisphere
52078.7
2036
Male, age 80, both hemispheres
25926.6
2746
Female, age 85, left hemisphere
13663.7
Lateral parabrachial nucleus nTPM: 30471.3
2792
Male, age 76, both hemispheres
40580.1
2790
Male, age 61, both hemispheres
38993.8
2139
Female, age 85, right hemisphere
24250.9
2013
Male, age 80, both hemispheres
18060.4
Lateral vestibular nucleus nTPM: 76875.4
2184
Male, age 76, both hemispheres
87039.8
2311
Male, age 80, both hemispheres
66711.0
Locus coeruleus nTPM: 42382.9
2720
Male, age 74, both hemispheres
76271.6
2162
Male, age 80, both hemispheres
58194.1
2788
Male, age 74, unknown
44646.7
2317
Female, age 72, unknown
36543.0
2014
Male, age 55, unknown
29498.3
1980
Male, age 76, both hemispheres
29362.7
2123
Female, age 91, both hemispheres
22163.9
Medial parabrachial nucleus nTPM: 38599.1
2854
Male, age 80, both hemispheres
60687.7
2786
Male, age 76, both hemispheres
51095.2
2156
Male, age 61, both hemispheres
42983.8
2170
Female, age 91, both hemispheres
29459.0
2463
Female, age 85, right hemisphere
8769.8
Medial periolivary nuclei nTPM: 39395.2
2458
Female, age 91, both hemispheres
77967.5
2171
Female, age 85, both hemispheres
49875.6
2063
Male, age 76, both hemispheres
25046.1
2081
Male, age 80, both hemispheres
23496.9
2791
Male, age 74, right hemisphere
20589.9
Motor facial nucleus nTPM: 67364.8
2795
Female, age 91, both hemispheres
129226.5
2327
Male, age 80, both hemispheres
99185.5
2697
Female, age 85, both hemispheres
93381.7
2365
Male, age 74, right hemisphere
30366.3
2062
Male, age 76, both hemispheres
26052.1
2126
Male, age 61, both hemispheres
25976.7
Motor trigeminal nucleus nTPM: 49656.7
2321
Female, age 91, both hemispheres
81087.4
2335
Male, age 61, both hemispheres
45904.5
2309
Male, age 76, both hemispheres
44348.5
2560
Male, age 74, both hemispheres
43018.2
2079
Male, age 80, both hemispheres
33925.0
Nuclei of the trapezoid body nTPM: 41650.1
2368
Female, age 91, both hemispheres
77228.1
2166
Male, age 80, both hemispheres
49703.0
1983
Male, age 76, both hemispheres
31003.6
2159
Male, age 61, both hemispheres
26592.2
2735
Female, age 85, both hemispheres
23723.8
Nucleus raphe magnus nTPM: 51565.2
2328
Male, age 80, both hemispheres
76712.5
2459
Female, age 91, both hemispheres
71480.3
2172
Female, age 85, both hemispheres
62158.1
2455
Male, age 74, both hemispheres
40656.3
2051
Male, age 76, both hemispheres
33218.0
2160
Male, age 61, both hemispheres
25165.9
Paramedian reticular nucleus nTPM: 33731.8
2313
Male, age 61, both hemispheres
49386.2
2050
Female, age 85, both hemispheres
35039.2
2052
Male, age 76, both hemispheres
32640.3
2057
Male, age 80, both hemispheres
17861.7
Pedunculopontine tegmental nucleus nTPM: 43743.9
2334
Male, age 80, both hemispheres
56380.0
2338
Male, age 61, both hemispheres
52773.6
1921
Female, age 85, both hemispheres
22077.9
Pontine nuclei nTPM: 26987.1
2319
Female, age 91, both hemispheres
51461.4
2787
Female, age 85, both hemispheres
34055.4
2115
Male, age 80, left hemisphere
29217.2
2454
Male, age 74, left hemisphere
28081.1
1863
Male, age 55, unknown
25059.5
1968
Male, age 76, left hemisphere
21983.3
2109
Female, age 72, unknown
16280.0
2727
Male, age 61, right hemisphere
9758.5
Pontine raphe nucleus nTPM: 38795.6
2853
Male, age 76, midline
48466.9
2122
Female, age 85, midline
29124.3
Posteroventral cochlear nucleus nTPM: 33215.5
2341
Male, age 80, both hemispheres
51945.2
2371
Male, age 61, both hemispheres
44157.0
2752
Female, age 85, both hemispheres
26859.5
2135
Female, age 91, both hemispheres
22568.8
2070
Male, age 76, both hemispheres
20547.1
Principal sensory trigeminal nucleus nTPM: 57847.1
2324
Male, age 76, both hemispheres
114179.4
2367
Female, age 91, left hemisphere
72207.0
2158
Male, age 61, both hemispheres
24842.3
2008
Male, age 80, left hemisphere
20159.8
Reticular pontine nucleus, caudal nTPM: 56153.6
2332
Male, age 80, right hemisphere
91330.0
2457
Female, age 91, both hemispheres
75456.6
2559
Male, age 74, both hemispheres
29421.3
2092
Male, age 76, both hemispheres
28406.7
Reticular pontine nucleus, oral nTPM: 39422.9
2366
Female, age 91, both hemispheres
83569.6
2167
Male, age 76, both hemispheres
48804.8
1939
Male, age 80, both hemispheres
24752.7
2361
Male, age 74, both hemispheres
21380.0
2012
Female, age 85, both hemispheres
18607.1
Reticulotegmental nucleus nTPM: 77413.1
2322
Female, age 91, both hemispheres
93017.7
2333
Male, age 80, both hemispheres
89803.4
2325
Male, age 76, both hemispheres
71209.7
2452
Male, age 74, both hemispheres
55621.7
Spinal trigeminal nucleus, oral nTPM: 47481.3
2164
Male, age 80, both hemispheres
85067.0
1978
Male, age 76, both hemispheres
33696.1
2737
Female, age 85, both hemispheres
23680.8
Subcoeruleus area nTPM: 33189.2
2323
Female, age 91, left hemisphere
43263.5
2451
Male, age 74, both hemispheres
40413.0
1958
Male, age 80, both hemispheres
32726.5
2089
Male, age 76, left hemisphere
31052.8
2369
Female, age 85, left hemisphere
18490.1
Superior olive nTPM: 45780.3
2561
Female, age 91, both hemispheres
89568.3
2329
Male, age 80, right hemisphere
80886.5
2020
Male, age 76, both hemispheres
21576.7
2364
Male, age 74, right hemisphere
18455.8
1875
Female, age 85, both hemispheres
18414.1
Ventral periolivary nuclei nTPM: 46612.6
2794
Female, age 91, left hemisphere
77621.9
2165
Male, age 80, both hemispheres
56380.7
2130
Female, age 85, both hemispheres
37285.6
2023
Male, age 76, both hemispheres
15162.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 54994.5
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9565.0
Pig sample
Sample description
nTPM
Pons nTPM: 9565.0
Samples: 4
Max nTPM: 12256.3
Min nTPM: 6861.9
Sample A
Female
12256.3
Sample B
Female
6861.9
Sample C
Male
7194.6
Sample D
Male
11947.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
