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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
105345.3
nTPM
HPA Brain:
52381.1
nTPM
GTEx:
105345.3
nTPM
Pig:
48372.2
nTPM
Mouse:
35059.7
nTPM
Allen mouse:
27.1
Expression energy
AMYGDALA - Annotated protein expression
Pending normal tissue analysis
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52381.1
Sample id
Sample description
nTPM
Amygdala nTPM: 48290.2
2695
Female, age 67, right hemisphere
94747.7
2814
Male, age 76, right hemisphere
50388.9
2514
Male, age 75, right hemisphere
43115.7
2517
Female, age 94, left hemisphere
38625.3
1987
Female, age 91, left hemisphere
14573.7
Basal amygdala nTPM: 52381.1
2827
Female, age 67, right hemisphere
96728.9
2609
Male, age 75, right hemisphere
66381.0
1955
Male, age 76, both hemispheres
45725.3
2685
Female, age 94, left hemisphere
45437.0
2243
Female, age 91, right hemisphere
38055.7
2110
Male, age 80, left hemisphere
21958.9
Central amygdala nTPM: 52111.3
2826
Female, age 94, left hemisphere
80539.4
2701
Female, age 91, right hemisphere
54782.1
1905
Male, age 76, both hemispheres
42200.5
2239
Male, age 80, left hemisphere
41851.0
2515
Male, age 75, right hemisphere
41183.6
Corticomedial amygdala nTPM: 45234.8
2535
Female, age 67, right hemisphere
77888.0
2240
Male, age 76, both hemispheres
56735.4
2428
Male, age 75, right hemisphere
41665.1
2242
Female, age 91, right hemisphere
38985.9
2829
Male, age 80, left hemisphere
31780.0
2429
Female, age 94, left hemisphere
24354.7
Lateral amygdala nTPM: 51825.5
2830
Female, age 67, right hemisphere
97126.7
2534
Female, age 94, left hemisphere
52225.2
2516
Male, age 75, right hemisphere
47447.6
2256
Male, age 80, left hemisphere
41531.0
2255
Female, age 91, right hemisphere
37451.6
1883
Male, age 76, both hemispheres
35170.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105345.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 105345.3
Samples: 152
Max nTPM: 425539.0
Min nTPM: 3490.3
Std nTPM: 70936.7
Median nTPM: 83556.0
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35059.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 35059.7
Samples: 4
Max nTPM: 42411.8
Min nTPM: 27822.7
Sample A
Male
27822.7
Sample B
Male
33542.0
Sample C
Female
42411.8
Sample D
Female
36462.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
