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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:61357.6 nTPM
Pig:40449.4 nTPM
Mouse:32328.9 nTPM
Allen mouse:21.7 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61357.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 47400.8
2497 Male, age 66, unknown 56362.6
2396 Male, age 61, right hemisphere 46636.2
2032 Female, age 42, unknown 39203.7
Centromedial thalamic nucleus
nTPM: 47676.5
2401 Male, age 76, right hemisphere 49325.4
2279 Female, age 85, left hemisphere 46027.5
Habenula
nTPM: 28230.4
2276 Male, age 66, unknown 42352.6
1957 Male, age 80, both hemispheres 29143.9
2252 Male, age 62, unknown 23047.4
2203 Male, age 61, left hemisphere 18377.7
Lateral geniculate body
nTPM: 51293.2
2857 Male, age 74, right hemisphere 92171.3
2659 Male, age 66, unknown 82301.0
2575 Female, age 94, right hemisphere 56435.5
2399 Male, age 61, left hemisphere 50323.2
2035 Female, age 72, unknown 41904.0
1953 Male, age 62, unknown 38039.2
2841 Male, age 80, both hemispheres 30393.9
2106 Female, age 67, right hemisphere 18777.8
Lateral thalamic nuclei
nTPM: 51733.3
2661 Female, age 72, unknown 103049.6
1903 Male, age 76, left hemisphere 54317.5
2573 Female, age 94, left hemisphere 49219.9
2577 Male, age 74, both hemispheres 40742.0
2765 Female, age 67, both hemispheres 11337.7
Medial dorsal thalamic nucleus
nTPM: 48853.2
2572 Female, age 94, right hemisphere 106510.2
2660 Female, age 72, unknown 76758.7
2576 Male, age 74, both hemispheres 59056.2
2498 Male, age 66, unknown 53725.9
2492 Male, age 75, right hemisphere 51030.4
1859 Male, age 76, both hemispheres 48644.0
2283 Male, age 80, right hemisphere 47911.1
2402 Female, age 67, both hemispheres 43177.9
2026 Male, age 62, unknown 38317.5
1810 Male, age 48, unknown 33774.4
1930 Female, age 42, unknown 33603.3
2039 Female, age 72, unknown 28685.0
1971 Male, age 61, right hemisphere 13896.9
Medial geniculate body
nTPM: 60936.0
2571 Male, age 75, right hemisphere 76849.6
2207 Male, age 80, right hemisphere 73934.0
2217 Female, age 72, unknown 64416.8
2657 Male, age 74, right hemisphere 64038.1
2650 Female, age 94, left hemisphere 61869.0
1811 Female, age 42, unknown 49034.3
2049 Male, age 76, both hemispheres 36409.9
Nucleus reuniens
nTPM: 36481.9
2210 Female, age 85, left hemisphere 48089.7
2205 Male, age 80, left hemisphere 44678.7
2212 Female, age 67, left hemisphere 16677.4
Nucleus rhomboideus
nTPM: 48622.0
2280 Female, age 85, left hemisphere 77166.1
2206 Male, age 80, both hemispheres 49830.4
2213 Female, age 67, left hemisphere 18869.5
Posterior thalamic nucleus
nTPM: 61357.6
2655 Male, age 74, right hemisphere 85941.5
2649 Female, age 94, both hemispheres 69933.8
2495 Female, age 67, right hemisphere 62055.0
2266 Male, age 76, right hemisphere 27499.9
Pulvinar
nTPM: 54127.8
2724 Male, age 74, right hemisphere 119304.9
2582 Female, age 72, unknown 84352.6
2398 Male, age 61, left hemisphere 60306.9
2214 Male, age 76, right hemisphere 53426.3
2496 Female, age 67, right hemisphere 45369.7
2499 Male, age 66, unknown 44682.2
1929 Male, age 48, unknown 43684.8
1932 Male, age 80, right hemisphere 33696.4
1899 Female, age 42, unknown 30853.4
1972 Male, age 62, unknown 25600.5
Subthalamic nucleus
nTPM: 37668.9
2658 Male, age 74, both hemispheres 61489.2
2216 Male, age 48, unknown 46428.6
2282 Male, age 61, both hemispheres 43413.6
2779 Female, age 42, unknown 39152.1
2406 Female, age 72, unknown 38371.3
2124 Male, age 62, unknown 28998.2
2275 Male, age 66, unknown 26362.9
2056 Female, age 72, unknown 17135.3
Ventral posterolateral thalamic nucleus
nTPM: 56845.4
2581 Female, age 72, unknown 115391.0
2570 Male, age 75, right hemisphere 64969.2
2397 Male, age 61, right hemisphere 45565.1
2578 Male, age 74, both hemispheres 45095.3
2740 Male, age 76, right hemisphere 37452.9
2197 Male, age 80, both hemispheres 32599.0
Ventral posteromedial thalamic nucleus
nTPM: 36078.1
2653 Male, age 74, both hemispheres 44165.4
2281 Male, age 75, right hemisphere 39648.3
2758 Male, age 80, both hemispheres 37662.7
2127 Male, age 76, right hemisphere 31836.1
2202 Male, age 61, left hemisphere 27077.8
Ventral thalamic nuclei
nTPM: 52844.9
2858 Female, age 72, unknown 95808.5
2204 Male, age 80, both hemispheres 69597.8
2580 Male, age 66, unknown 64049.9
1845 Male, age 48, unknown 54922.9
1860 Male, age 76, both hemispheres 45481.9
2285 Male, age 62, unknown 43157.4
1912 Female, age 42, unknown 38098.1
2652 Male, age 74, left hemisphere 34705.9
2291 Female, age 72, unknown 29782.0
Zona incerta
nTPM: 45245.2
2663 Female, age 72, unknown 66386.8
2208 Male, age 80, right hemisphere 48961.9
2403 Male, age 62, unknown 48790.3
2822 Male, age 74, right hemisphere 48558.9
2215 Male, age 66, unknown 13528.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40449.4
Pig sample Sample description nTPM
Thalamus
nTPM: 40449.4
Samples: 4

Max nTPM: 55903.2
Min nTPM: 21593.5
Sample A Female 55903.2
Sample B Female 31713.6
Sample C Male 52587.1
Sample D Male 21593.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32328.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 32328.9
Samples: 4

Max nTPM: 35870.0
Min nTPM: 28797.1
Sample A Male 34020.6
Sample B Male 30627.8
Sample C Female 35870.0
Sample D Female 28797.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 21.7
74357755 Antisense, RP_051219_04_A04, Mouse strain C57BL/6J (56 days, male) 21.7

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