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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PONS AND MEDULLA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:81162.7 nTPM
Pig:41825.7 nTPM
Mouse:30229.5 nTPM
Allen mouse:24.1 Expression energy

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81162.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 48166.7
2301 Female, age 85, both hemispheres 97282.9
2188 Female, age 91, both hemispheres 37804.4
1984 Male, age 76, both hemispheres 33457.3
2090 Male, age 80, both hemispheres 24122.1
Area postrema
nTPM: 69040.7
2799 Male, age 61, both hemispheres 84393.0
2306 Male, age 80, both hemispheres 80562.5
2054 Male, age 76, both hemispheres 42166.7
Dorsal cochlear nucleus
nTPM: 54438.9
2378 Male, age 80, both hemispheres 90524.0
2802 Male, age 74, right hemisphere 66134.7
2187 Female, age 91, both hemispheres 39223.9
2058 Male, age 76, both hemispheres 38159.2
2370 Male, age 61, both hemispheres 38152.5
Dorsal medullary reticular nucleus
nTPM: 38850.1
2373 Male, age 61, both hemispheres 46882.6
2088 Male, age 76, both hemispheres 44842.8
2040 Female, age 85, both hemispheres 24824.9
Dorsal motor vagal complex
nTPM: 65454.8
2797 Male, age 61, both hemispheres 138153.0
2807 Female, age 85, both hemispheres 103878.3
2185 Male, age 76, both hemispheres 75200.9
2643 Male, age 74, both hemispheres 56825.9
2813 Female, age 72, unknown 50594.2
2844 Male, age 55, unknown 40143.6
2133 Female, age 91, both hemispheres 31059.4
2000 Male, age 74, unknown 27783.1
Dorsal tegmental nucleus
nTPM: 45929.4
2358 Male, age 61, both hemispheres 82280.6
1936 Male, age 76, left hemisphere 37568.2
2083 Male, age 80, both hemispheres 33843.9
2326 Male, age 74, both hemispheres 30024.8
Dorsolateral tegmental area
nTPM: 31154.1
2141 Male, age 76, both hemispheres 47877.6
2337 Male, age 61, both hemispheres 39270.3
2654 Male, age 80, both hemispheres 34064.0
2751 Female, age 85, both hemispheres 18852.7
2360 Male, age 74, both hemispheres 15705.7
Gigantocellular reticular nuclei, medullary
nTPM: 48701.6
2387 Female, age 91, both hemispheres 78578.4
2310 Male, age 80, both hemispheres 75147.9
2314 Male, age 61, both hemispheres 59742.4
2462 Male, age 74, both hemispheres 30819.1
2022 Male, age 76, right hemisphere 29348.6
1876 Female, age 85, both hemispheres 18572.9
Gigantocellular reticular nuclei, pars
nTPM: 67800.3
2330 Male, age 80, both hemispheres 111546.2
2706 Male, age 80, both hemispheres 104950.7
2336 Male, age 61, both hemispheres 48301.7
2084 Female, age 85, both hemispheres 37400.4
2168 Male, age 76, both hemispheres 36802.4
Inferior olive
nTPM: 58803.8
2628 Female, age 91, both hemispheres 118862.6
2379 Male, age 80, both hemispheres 73823.8
2085 Female, age 85, both hemispheres 39747.8
2178 Male, age 61, both hemispheres 35812.5
2563 Male, age 74, both hemispheres 25772.3
Kolliker-Fuse nucleus
nTPM: 45658.8
2793 Female, age 91, left hemisphere 81343.9
2163 Male, age 80, both hemispheres 41116.0
2315 Male, age 76, right hemisphere 14516.5
Lateral lemniscal nuclei
nTPM: 39933.0
2320 Female, age 91, left hemisphere 64367.0
2453 Male, age 74, right hemisphere 49071.2
2169 Male, age 76, both hemispheres 48547.8
2036 Male, age 80, both hemispheres 25140.7
2746 Female, age 85, left hemisphere 12538.1
Lateral medullary reticular nucleus
nTPM: 39962.5
2804 Female, age 91, both hemispheres 72077.7
2374 Male, age 61, both hemispheres 63387.4
2190 Female, age 85, both hemispheres 41270.1
2044 Male, age 76, both hemispheres 30973.6
2852 Male, age 80, both hemispheres 19593.1
2305 Male, age 74, both hemispheres 12473.2
Lateral parabrachial nucleus
nTPM: 28550.2
2790 Male, age 61, both hemispheres 39436.0
2792 Male, age 76, both hemispheres 36179.9
2139 Female, age 85, right hemisphere 21824.6
2013 Male, age 80, both hemispheres 16760.4
Lateral vestibular nucleus
nTPM: 63383.6
2184 Male, age 76, both hemispheres 68572.7
2311 Male, age 80, both hemispheres 58194.5
Locus coeruleus
nTPM: 39063.4
2720 Male, age 74, both hemispheres 77046.0
2162 Male, age 80, both hemispheres 52233.1
2788 Male, age 74, unknown 36259.3
2317 Female, age 72, unknown 32156.0
1980 Male, age 76, both hemispheres 28389.6
2014 Male, age 55, unknown 27876.0
2123 Female, age 91, both hemispheres 19483.9
Medial olivary nucleus
nTPM: 27127.2
2851 Male, age 80, both hemispheres 65518.8
2138 Female, age 91, both hemispheres 19968.4
1962 Male, age 76, both hemispheres 13550.5
1943 Male, age 61, both hemispheres 9471.3
Medial parabrachial nucleus
nTPM: 36430.4
2854 Male, age 80, both hemispheres 60958.3
2786 Male, age 76, both hemispheres 46165.3
2156 Male, age 61, both hemispheres 39466.5
2170 Female, age 91, both hemispheres 26875.8
2463 Female, age 85, right hemisphere 8685.9
Medial periolivary nuclei
nTPM: 36366.9
2458 Female, age 91, both hemispheres 73449.4
2171 Female, age 85, both hemispheres 44299.2
2063 Male, age 76, both hemispheres 24640.2
2791 Male, age 74, right hemisphere 19885.1
2081 Male, age 80, both hemispheres 19560.4
Medial vestibular nucleus
nTPM: 47912.2
2624 Male, age 61, both hemispheres 93851.8
2803 Female, age 91, both hemispheres 54536.4
2134 Male, age 76, both hemispheres 44899.7
2801 Male, age 74, both hemispheres 38518.7
2093 Male, age 80, both hemispheres 34011.5
2743 Female, age 85, both hemispheres 21654.9
Motor facial nucleus
nTPM: 65240.7
2795 Female, age 91, both hemispheres 130236.2
2697 Female, age 85, both hemispheres 95451.3
2327 Male, age 80, both hemispheres 89577.5
2365 Male, age 74, right hemisphere 27690.9
2062 Male, age 76, both hemispheres 25943.4
2126 Male, age 61, both hemispheres 22544.6
Motor hypoglossal nucleus
nTPM: 44912.7
2461 Male, age 61, both hemispheres 82109.5
2132 Female, age 85, both hemispheres 52762.9
2182 Male, age 80, both hemispheres 46971.2
2125 Female, age 91, both hemispheres 25756.1
2277 Male, age 76, both hemispheres 16963.8
Motor trigeminal nucleus
nTPM: 44505.3
2321 Female, age 91, both hemispheres 73312.7
2309 Male, age 76, both hemispheres 42391.7
2335 Male, age 61, both hemispheres 40148.9
2560 Male, age 74, both hemispheres 39888.6
2079 Male, age 80, both hemispheres 26784.7
Nuclei of the trapezoid body
nTPM: 38067.6
2368 Female, age 91, both hemispheres 71002.3
2166 Male, age 80, both hemispheres 43066.9
1983 Male, age 76, both hemispheres 30374.7
2159 Male, age 61, both hemispheres 23651.7
2735 Female, age 85, both hemispheres 22242.5
Nucleus ambiguus
nTPM: 10627.5
2071 Male, age 76, both hemispheres 13349.7
2096 Female, age 85, both hemispheres 7905.4
Nucleus cuneatus
nTPM: 81162.7
2805 Female, age 91, both hemispheres 166384.9
2381 Male, age 80, both hemispheres 98366.0
2808 Female, age 85, both hemispheres 94713.6
2131 Male, age 76, both hemispheres 72530.3
2380 Male, age 80, both hemispheres 72425.2
2562 Male, age 61, both hemispheres 69945.5
2100 Male, age 76, both hemispheres 66176.1
2564 Male, age 74, both hemispheres 48221.3
2376 Male, age 61, both hemispheres 41701.8
Nucleus gracilis
nTPM: 77961.9
2299 Female, age 85, both hemispheres 102883.9
2382 Male, age 80, both hemispheres 90380.1
2627 Male, age 74, both hemispheres 40621.8
Nucleus raphe magnus
nTPM: 47279.1
2328 Male, age 80, both hemispheres 70160.5
2459 Female, age 91, both hemispheres 63505.1
2172 Female, age 85, both hemispheres 58750.2
2455 Male, age 74, both hemispheres 34203.8
2051 Male, age 76, both hemispheres 34132.4
2160 Male, age 61, both hemispheres 22922.7
Nucleus raphe obscurus
nTPM: 27898.2
2845 Female, age 85, midline 37924.0
2800 Male, age 61, midline 35820.8
2142 Male, age 76, midline 9949.6
Nucleus raphe pallidus
nTPM: 18228.4
2183 Male, age 80, midline 31057.4
2145 Male, age 76, midline 14727.5
1924 Male, age 61, midline 8900.4
Nucleus tractus solitarii
nTPM: 44188.0
2191 Female, age 85, both hemispheres 64334.3
2307 Male, age 80, both hemispheres 60331.4
2656 Male, age 76, both hemispheres 35899.8
2144 Female, age 91, right hemisphere 16186.6
Paramedian reticular nucleus
nTPM: 30869.1
2313 Male, age 61, both hemispheres 41826.9
2050 Female, age 85, both hemispheres 34199.0
2052 Male, age 76, both hemispheres 30320.9
2057 Male, age 80, both hemispheres 17129.6
Parvicellular reticular nuclei
nTPM: 33319.6
2558 Male, age 74, both hemispheres 43391.0
2095 Male, age 76, both hemispheres 34864.8
2119 Male, age 80, both hemispheres 21703.2
Parvicellular reticular nuclei, medullary
nTPM: 40723.3
2181 Male, age 80, left hemisphere 54198.8
2189 Female, age 91, both hemispheres 35068.7
2091 Female, age 85, both hemispheres 32902.4
Pedunculopontine tegmental nucleus
nTPM: 41105.8
2334 Male, age 80, both hemispheres 53289.4
2338 Male, age 61, both hemispheres 47805.4
1921 Female, age 85, both hemispheres 22222.6
Peritrigeminal nucleus
nTPM: 25373.9
2136 Male, age 76, both hemispheres 35762.1
2179 Male, age 61, both hemispheres 22740.7
2067 Female, age 85, both hemispheres 17618.7
Pontine nuclei
nTPM: 24192.7
2319 Female, age 91, both hemispheres 45097.0
2787 Female, age 85, both hemispheres 34455.7
2115 Male, age 80, left hemisphere 25088.0
2454 Male, age 74, left hemisphere 23899.3
1863 Male, age 55, unknown 21817.6
1968 Male, age 76, left hemisphere 20682.5
2109 Female, age 72, unknown 13268.5
2727 Male, age 61, right hemisphere 9232.8
Pontine raphe nucleus
nTPM: 37476.1
2853 Male, age 76, midline 48928.2
2122 Female, age 85, midline 26024.0
Posteroventral cochlear nucleus
nTPM: 30481.8
2341 Male, age 80, both hemispheres 47241.0
2371 Male, age 61, both hemispheres 41211.5
2752 Female, age 85, both hemispheres 26228.0
2070 Male, age 76, both hemispheres 19157.0
2135 Female, age 91, both hemispheres 18571.2
Prepositus hypoglossal nucleus
nTPM: 43131.0
2855 Female, age 85, right hemisphere 54279.7
2086 Male, age 80, both hemispheres 31982.3
Principal sensory trigeminal nucleus
nTPM: 50697.0
2324 Male, age 76, both hemispheres 97802.9
2367 Female, age 91, left hemisphere 62938.0
2158 Male, age 61, both hemispheres 22648.2
2008 Male, age 80, left hemisphere 19398.7
Reticular pontine nucleus, caudal
nTPM: 52011.0
2332 Male, age 80, right hemisphere 84605.2
2457 Female, age 91, both hemispheres 67763.4
2559 Male, age 74, both hemispheres 30237.3
2092 Male, age 76, both hemispheres 25437.9
Reticular pontine nucleus, oral
nTPM: 37161.1
2366 Female, age 91, both hemispheres 78666.1
2167 Male, age 76, both hemispheres 44787.8
1939 Male, age 80, both hemispheres 24878.2
2012 Female, age 85, both hemispheres 18982.0
2361 Male, age 74, both hemispheres 18491.6
Reticulotegmental nucleus
nTPM: 71725.6
2322 Female, age 91, both hemispheres 89214.5
2333 Male, age 80, both hemispheres 80390.9
2325 Male, age 76, both hemispheres 66905.9
2452 Male, age 74, both hemispheres 50391.3
Spinal trigeminal nucleus, caudal
nTPM: 57625.4
2390 Female, age 91, both hemispheres 82955.6
2308 Male, age 80, both hemispheres 70057.0
2447 Male, age 76, both hemispheres 56687.9
2642 Male, age 74, both hemispheres 41377.9
2312 Male, age 61, both hemispheres 37048.6
Spinal trigeminal nucleus, interpolar
nTPM: 46476.5
2389 Female, age 91, both hemispheres 75130.9
2625 Male, age 61, both hemispheres 73079.7
2386 Female, age 85, both hemispheres 29240.5
2033 Male, age 80, both hemispheres 28275.8
2066 Male, age 76, right hemisphere 26655.5
Spinal trigeminal nucleus, oral
nTPM: 44347.7
2164 Male, age 80, both hemispheres 77729.5
1978 Male, age 76, both hemispheres 33201.5
2737 Female, age 85, both hemispheres 22112.2
Spinal vestibular nucleus
nTPM: 43617.3
2796 Male, age 61, both hemispheres 71500.7
2806 Female, age 85, both hemispheres 62381.8
2186 Female, age 91, both hemispheres 36716.6
2384 Male, age 74, both hemispheres 33349.3
2748 Male, age 76, both hemispheres 29590.4
2780 Male, age 80, both hemispheres 28164.8
Subcoeruleus area
nTPM: 31047.8
2323 Female, age 91, left hemisphere 42067.1
2451 Male, age 74, both hemispheres 35993.6
1958 Male, age 80, both hemispheres 32809.2
2089 Male, age 76, left hemisphere 26974.5
2369 Female, age 85, left hemisphere 17394.6
Superior olive
nTPM: 43698.9
2561 Female, age 91, both hemispheres 90091.8
2329 Male, age 80, right hemisphere 72735.7
2020 Male, age 76, both hemispheres 20785.3
1875 Female, age 85, both hemispheres 18499.8
2364 Male, age 74, right hemisphere 16381.6
Superior vestibular nucleus
nTPM: 24315.8
2061 Male, age 76, both hemispheres 27670.1
2015 Male, age 80, both hemispheres 23888.8
2383 Male, age 74, both hemispheres 21388.4
Ventral medullary reticular nucleus
nTPM: 38450.8
2372 Male, age 61, both hemispheres 47389.9
2060 Male, age 76, both hemispheres 29511.6
Ventral periolivary nuclei
nTPM: 43677.6
2794 Female, age 91, left hemisphere 75993.2
2165 Male, age 80, both hemispheres 50715.6
2130 Female, age 85, both hemispheres 33238.1
2023 Male, age 76, both hemispheres 14763.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 35184.0
2302 Female, age 91, both hemispheres 62623.6
2180 Male, age 61, both hemispheres 35499.3
2118 Male, age 80, both hemispheres 30239.7
1986 Male, age 76, both hemispheres 24569.7
2741 Female, age 85, both hemispheres 22987.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 50429.9
2840 Female, age 85, both hemispheres 70739.2
2456 Female, age 91, both hemispheres 63927.8
2359 Male, age 61, both hemispheres 57530.4
2161 Male, age 80, both hemispheres 45791.4
2449 Male, age 74, both hemispheres 32979.2
1959 Male, age 76, both hemispheres 31611.2

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41825.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 34947.1
Samples: 4

Max nTPM: 37926.2
Min nTPM: 26728.9
Sample A Female 37578.4
Sample B Female 37554.9
Sample C Male 37926.2
Sample D Male 26728.9
Pons
nTPM: 41825.7
Samples: 4

Max nTPM: 48908.4
Min nTPM: 29250.2
Sample A Female 48908.4
Sample B Female 29250.2
Sample C Male 44504.5
Sample D Male 44639.8

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30229.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 30229.5
Samples: 4

Max nTPM: 31767.6
Min nTPM: 29262.3
Sample A Male 29513.1
Sample B Male 30374.9
Sample C Female 29262.3
Sample D Female 31767.6

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 24.1
74357755 Antisense, RP_051219_04_A04, Mouse strain C57BL/6J (56 days, male) 24.1
Pons
Expression energy: 22.2
74357755 Antisense, RP_051219_04_A04, Mouse strain C57BL/6J (56 days, male) 22.2

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