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RPL39
HPA
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2062.1 nTPM
HPA:1238.5 nTPM
GTEx:2062.1 nTPM
FANTOM5:35.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047105
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1238.5
overview
Male, age 65
Small intestine sample 232
nTPM: 1607.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1224.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1046.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1075.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2062.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2062.1
Samples: 187

Max nTPM: 5321.7
Min nTPM: 894.1
Std nTPM: 801.8
Median nTPM: 1870.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5321.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4802.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4485.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4446.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4249.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4173.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3974.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3804.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3781.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3762.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3746.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3700.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3594.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3454.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 3329.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3190.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3176.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3143.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3100.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3011.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2995.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2970.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2943.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2939.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2937.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2906.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2895.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2849.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2781.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2756.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2743.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2720.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2665.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2646.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2646.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2626.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2597.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2579.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2568.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2543.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2540.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2517.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2493.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2477.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2460.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2431.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 2427.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2415.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2414.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2405.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2400.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2383.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2337.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2334.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2314.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2311.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2310.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2305.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2303.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2290.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2290.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2283.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2280.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2266.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2248.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2235.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2231.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2195.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2189.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2173.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2153.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2114.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2081.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2079.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2076.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2074.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2055.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2040.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2015.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2010.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2009.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1987.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1978.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1956.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1955.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1941.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1936.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1928.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1928.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1918.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1879.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1875.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1874.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1870.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1861.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1835.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1832.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1824.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1821.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1820.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1800.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1773.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1763.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1754.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1752.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1736.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1733.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1730.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1721.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1717.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1717.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1705.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1679.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1672.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1669.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1666.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1662.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1662.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1641.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1639.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1630.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1626.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1624.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1623.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1622.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1620.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1593.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1588.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1583.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1574.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1569.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1561.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1560.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1518.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1513.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1504.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1493.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1478.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1450.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1444.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1443.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1439.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1436.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1433.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1416.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1414.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1410.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1409.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1403.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1401.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1397.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1386.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1367.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1367.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1349.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1340.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1333.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1332.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1332.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1328.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1327.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1326.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1318.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1315.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1309.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1305.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 1278.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1273.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1260.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1258.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1258.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1250.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1232.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1217.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1211.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1207.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1172.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1125.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1107.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1097.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1081.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1074.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1067.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1055.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 948.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 943.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 894.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 35.7
FF:10024-101D6 15,40,85 years, mixed 35.7

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