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RPL39
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1401.2 nTPM
HPA Brain:458.3 nTPM
GTEx:1401.2 nTPM
FANTOM5:45.4 Scaled Tags Per Million
Pig:0.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

458.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 321.9
1981 Female, age 72, midline 432.7
2048 Male, age 55, midline 370.4
2565 Male, age 75, midline 343.6
2816 Male, age 47, midline 243.7
2194 Female, age 79, both hemispheres 219.2
Cervical spinal cord, dorsal horn
nTPM: 365.6
2173 Female, age 72, unknown 530.0
2069 Male, age 47, both hemispheres 477.8
2296 Male, age 66, both hemispheres 392.8
1877 Male, age 55, unknown 382.7
2297 Male, age 75, both hemispheres 219.3
2721 Male, age 90, both hemispheres 190.9
Cervical spinal cord, ventral horn
nTPM: 458.3
2098 Female, age 72, unknown 653.0
2480 Male, age 75, both hemispheres 644.7
2809 Male, age 90, both hemispheres 598.1
2068 Male, age 55, unknown 357.5
2295 Male, age 66, both hemispheres 318.9
2820 Female, age 79, both hemispheres 177.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1401.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1401.2
Samples: 159

Max nTPM: 2848.7
Min nTPM: 509.7
Std nTPM: 512.9
Median nTPM: 1293.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2848.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2830.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2735.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2710.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2616.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2612.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2542.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2520.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2462.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2412.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2370.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2270.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2249.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2243.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2226.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2212.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2149.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2066.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2049.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2027.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2018.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2013.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1997.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1995.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1964.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1944.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1940.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1932.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1909.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1893.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1892.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1833.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1797.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1769.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1762.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1746.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1736.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1724.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1705.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1661.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1630.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1583.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1583.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1579.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1572.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1570.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1569.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1564.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1564.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1540.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1536.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1527.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1525.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1515.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1512.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1496.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1488.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1479.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1448.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1447.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1444.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1441.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1418.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1417.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1417.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1415.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1415.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1414.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1392.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1377.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1370.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1359.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1334.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1329.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1328.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1324.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1319.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1318.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1295.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1293.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1286.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1284.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1283.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1274.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1269.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1264.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1258.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1256.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1256.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1231.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1228.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1207.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1200.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1194.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1193.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1166.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1164.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1156.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1145.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1141.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1135.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1134.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1119.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1117.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1115.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1112.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1105.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1096.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1091.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1091.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1087.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1074.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1072.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1066.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1061.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1051.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1046.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1041.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1027.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1026.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1009.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1003.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 998.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 980.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 975.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 974.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 973.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 968.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 966.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 958.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 958.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 951.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 947.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 933.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 925.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 920.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 911.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 894.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 892.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 882.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 875.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 855.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 841.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 838.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 834.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 813.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 813.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 807.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 795.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 784.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 771.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 710.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 676.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 670.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 670.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 634.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 594.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 567.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 509.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 45.4
FF:10181-103D1 60 years, female 60.0
FF:10159-103A6 76 years, female 30.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.9
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.0
Sample A Female 1.1
Sample B Female 2.3
Sample C Male 0.0
Sample D Male 0.0
Ventral spinal cord
nTPM: 0.7
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 1.4
Sample C Male 1.4
Sample D Male 0.0

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