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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:125847.7 nTPM
HPA Brain:59174.6 nTPM
GTEx:125847.7 nTPM
Pig:58114.6 nTPM
Mouse:41593.8 nTPM
Allen mouse:26.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59174.6
Sample id Sample description nTPM
Amygdala
nTPM: 49157.7
2695 Female, age 67, right hemisphere 82431.2
2514 Male, age 75, right hemisphere 49472.7
2517 Female, age 94, left hemisphere 47503.1
2814 Male, age 76, right hemisphere 47254.2
1987 Female, age 91, left hemisphere 19127.2
Basal amygdala
nTPM: 56067.6
2827 Female, age 67, right hemisphere 107584.1
2609 Male, age 75, right hemisphere 68862.7
2685 Female, age 94, left hemisphere 48009.3
2243 Female, age 91, right hemisphere 43177.2
1955 Male, age 76, both hemispheres 42535.3
2110 Male, age 80, left hemisphere 26237.2
Central amygdala
nTPM: 56385.2
2826 Female, age 94, left hemisphere 101804.8
2701 Female, age 91, right hemisphere 47183.7
1905 Male, age 76, both hemispheres 45484.9
2515 Male, age 75, right hemisphere 44712.9
2239 Male, age 80, left hemisphere 42739.9
Corticomedial amygdala
nTPM: 46156.7
2535 Female, age 67, right hemisphere 73736.8
2240 Male, age 76, both hemispheres 51010.8
2428 Male, age 75, right hemisphere 47651.3
2242 Female, age 91, right hemisphere 41164.4
2829 Male, age 80, left hemisphere 34286.1
2429 Female, age 94, left hemisphere 29090.6
Lateral amygdala
nTPM: 59174.6
2830 Female, age 67, right hemisphere 122862.1
2534 Female, age 94, left hemisphere 63075.0
2516 Male, age 75, right hemisphere 60694.7
1883 Male, age 76, both hemispheres 37725.9
2256 Male, age 80, left hemisphere 37614.2
2255 Female, age 91, right hemisphere 33075.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125847.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 125847.7
Samples: 152

Max nTPM: 542276.2
Min nTPM: 2348.8
Std nTPM: 84391.7
Median nTPM: 101145.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 542276.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 476572.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 471595.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 334929.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 323926.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 323162.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 297808.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 297117.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 261939.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 256688.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 250513.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 242709.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 233989.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 231666.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 230887.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 230702.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 223995.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 219216.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 218638.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 216429.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 213421.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 213379.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 210198.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 196765.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 189649.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 189411.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 187788.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 186208.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 184409.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 183579.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 171710.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 171134.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 169770.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 166720.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 165159.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 164434.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 164022.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 160935.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 158411.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 154557.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 151018.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 144511.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 144493.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 138664.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 136501.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 135610.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 134695.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 134413.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 132797.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 130834.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 129993.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 128033.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 122047.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 120612.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 120035.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 120011.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 119954.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 118918.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 118221.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 117689.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 117427.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 117033.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116527.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 116423.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 113247.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 112596.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 109528.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 108824.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108414.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 107323.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 105230.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 103704.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103000.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 102759.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102263.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 101547.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 100742.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99864.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 97929.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 97023.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 96427.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 95821.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94036.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 93365.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 92631.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 92572.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 92474.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 90330.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 88207.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 87249.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 86897.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 86614.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 84742.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 84051.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 83946.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 83143.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 81590.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 81375.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 81360.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 81135.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 80210.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 79663.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 79404.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 78839.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 78806.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 78183.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 76901.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 76813.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76348.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 76085.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 75015.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 74973.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 74828.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 74712.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 74613.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 73998.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 73832.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 73726.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 73306.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 72590.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 72269.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 70524.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 67580.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 67332.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63646.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 61059.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 60888.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 60032.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 60017.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 57816.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 55694.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55688.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 54628.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 54315.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 51990.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 51335.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 51328.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 49884.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 48029.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 47811.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46364.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 46135.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45872.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44333.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 44039.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 43838.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43621.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 40661.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 38933.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 38903.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 24201.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2348.8
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AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58114.6
Pig sample Sample description nTPM
Amygdala
nTPM: 58114.6
Samples: 4

Max nTPM: 73396.7
Min nTPM: 29340.1
Sample A Female 63028.4
Sample B Female 73396.7
Sample C Male 66693.3
Sample D Male 29340.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41593.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 41593.8
Samples: 4

Max nTPM: 49596.7
Min nTPM: 33303.0
Sample A Male 33303.0
Sample B Male 39892.5
Sample C Female 49596.7
Sample D Female 43582.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 28.4
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 25.5

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