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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:30159.3 nTPM
HPA:15396.4 nTPM
GTEx:30159.3 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042788
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15396.4
overview
Male, age 65
Small intestine sample 232
nTPM: 16680.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 14136.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 14223
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 16544.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30159.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 30159.3
Samples: 187

Max nTPM: 85558.8
Min nTPM: 2906.2
Std nTPM: 16312.8
Median nTPM: 26961.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 85558.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 82503.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 72059.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 71203.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 70434.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 68486.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 66901.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 65488.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 64384.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 63821.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 63135.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 60826.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 57930.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 56997.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 56784.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 56454.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 56398.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 54339.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 54190.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 52901.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 52822.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 50749.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 50435.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 49738.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 48905.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 48104.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 46640.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 46567.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 44969.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 44908.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 44376.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 44355.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 44345.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 44115.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 43706.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 43172.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 42394.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 42332.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 42278.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 41600.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 41578.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 41095.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 40728.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 40521.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 40394.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 40034.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 39715.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 39586.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 39396.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 39313.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 38726.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 37960.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 37925.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 37133.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 36488.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 36427.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 36343.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 36227.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 35056.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 34804.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 34796.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 34635.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 33949.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 33694.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 33297.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 32754.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 32465.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 32374.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 32019.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 31793.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 31603.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 31533.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 31411.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 31000.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 30763.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 30609.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 30266.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 30088.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 29795.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 29779.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 29740.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 29518.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 29456.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 29283.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 29125.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 28790.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 28349.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 27906.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 27864.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 27777.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 27483.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 27144.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 27021.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 26961.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 26936.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 26933.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 26880.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 26624.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 26435.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 26419.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 26397.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 26372.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 26210.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 26046.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 25956.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 25911.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 25610.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 25398.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 25066.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 24886.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 24800.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 24759.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 24510.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 23586.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 22803.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 22752.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 22700.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 22528.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 22206.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 22097.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 21966.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 21914.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 21693.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 21376.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 21273.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 21081.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 21002.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 20845.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 20792.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 20702.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 20187.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 20166.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 20127.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 19901.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 19063.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 18983.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 18951.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 18812.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 18768.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 18598.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 18592.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 18431.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 18133.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 17882.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 17833.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 17760.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 17391.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 17238.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 17102.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 16962.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 16786.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 16600.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 16430.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 14842.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 14788.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 14559.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 14325.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 14122.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 13583.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 13199.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 13130.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 12858.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 12573.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 12490.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 12354.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 12176.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 12170.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 12161.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 11939.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 11747.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 11656.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 11477.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 11203.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 10500.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 10190.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 9452.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 9393.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 9297.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 7916.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 6672.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 6386.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 6327.8
GTEX-1192X-2526-SM-59868 50-59 years, male 5269.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4729.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 4046.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3323.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2906.2
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