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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:277.7 nTPM
GTEx:277.7 nTPM
FANTOM5:962.8 Scaled Tags Per Million
Pig:83.3 nTPM
Mouse:522.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 277.7
Samples: 105

Max nTPM: 462.5
Min nTPM: 77.6
Std nTPM: 69.6
Median nTPM:
218_1 71 years, female 462.5
355_1 70 years, female 401.0
353_1 82 years, female 379.7
321_1 62 years, female 378.0
379_1 60 years, male 373.4
319_1 81 years, male 372.5
452_1 88 years, female 367.8
237_1 82 years, male 366.5
375_1 74 years, female 357.2
352_1 62 years, male 355.6
320_1 89 years, female 354.3
376_1 75 years, female 353.8
354_1 81 years, female 347.6
389_1 86 years, female 346.2
35_1 74 years, female 344.6
386_1 76 years, male 342.4
172_1 72 years, female 341.6
41_1 94 years, female 337.9
384_1 83 years, male 337.8
173_1 67 years, male 332.3
447_1 81 years, male 332.3
335_1 73 years, female 331.0
350_1 84 years, female 330.6
377_1 82 years, female 330.4
2_1 77 years, female 328.5
243_1 75 years, male 328.5
394_1 75 years, female 328.5
317_1 60 years, male 326.8
189_1 76 years, male 325.0
6_1 73 years, female 324.5
351_1 91 years, male 321.6
295_1 61 years, female 319.7
356_1 87 years, female 318.1
163_1 78 years, male 315.9
4_1 88 years, female 315.0
349_1 83 years, male 312.5
322_1 76 years, male 312.4
99_1 64 years, male 310.8
526_1 61 years, male 307.7
318_1 68 years, male 306.9
404_1 82 years, female 306.5
293_1 68 years, female 305.5
246_1 77 years, male 305.4
347_1 72 years, male 305.2
17_1 71 years, male 304.1
120_1 70 years, female 302.2
145_1 84 years, male 296.9
153_1 70 years, female 295.0
177_1 74 years, male 293.5
137_1 83 years, male 292.7
286_1 68 years, female 291.1
292_1 71 years, male 289.9
405_1 91 years, male 285.6
307_1 66 years, female 285.1
425_1 59 years, female 284.9
406_1 79 years, male 279.0
316_1 62 years, male 278.0
348_1 84 years, male 276.3
480_1 63 years, male 274.0
126_1 63 years, male 273.8
42_1 85 years, male 273.0
311_1 78 years, male 272.6
506_1 65 years, male 271.7
503_1 68 years, male 270.8
266_1 85 years, male 267.3
291_1 76 years, male 266.1
229_1 69 years, female 265.3
115_1 83 years, male 262.0
308_1 70 years, female 262.0
264_1 73 years, female 261.2
396_1 62 years, male 260.5
109_1 81 years, female 253.7
251_1 78 years, male 252.7
18_1 88 years, male 250.6
517_1 88 years, male 249.3
254_1 77 years, female 248.8
117_1 61 years, male 244.9
518_1 75 years, female 243.4
315_1 62 years, female 238.7
265_1 87 years, male 237.7
119_1 70 years, female 233.6
288_1 66 years, female 232.1
9_1 66 years, female 228.9
139_1 64 years, female 226.8
217_1 76 years, male 225.7
468_1 89 years, male 219.7
142_1 61 years, female 214.3
313_1 79 years, female 213.2
495_1 57 years, female 209.9
499_1 55 years, female 209.8
314_1 67 years, male 209.6
162_1 79 years, female 203.1
324_1 76 years, male 198.2
81_1 67 years, male 197.0
466_1 57 years, female 171.5
43_1 64 years, female 166.6
32_1 67 years, male 162.0
415_1 77 years, female 159.3
89_1 63 years, male 157.8
501_1 88 years, male 149.2
414_1 84 years, female 145.4
149_1 88 years, male 118.7
413_1 59 years, female 91.2
490_1 67 years, female 84.8
491_1 89 years, female 77.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

962.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 962.8
FF:10030-101E3 24-65 years, mixed 962.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.3
Pig sample Sample description nTPM
Retina
nTPM: 83.3
Samples: 4

Max nTPM: 93.3
Min nTPM: 73.3
Sample A Female 77.9
Sample B Female 88.6
Sample C Male 93.3
Sample D Male 73.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

522.7
Mouse sample Sample description nTPM
Retina
nTPM: 522.7
Samples: 4

Max nTPM: 608.9
Min nTPM: 439.5
Sample A Male 573.7
Sample B Male 439.5
Sample C Female 608.9
Sample D Female 468.7

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