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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:347.1 nTPM
HPA Brain:344.2 nTPM
GTEx:347.1 nTPM
FANTOM5:750.2 Scaled Tags Per Million
Pig:271.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 287.7
1981 Female, age 72, midline 344.8
2565 Male, age 75, midline 302.5
2194 Female, age 79, both hemispheres 270.5
2816 Male, age 47, midline 264.3
2048 Male, age 55, midline 256.6
Cervical spinal cord, dorsal horn
nTPM: 298.3
2173 Female, age 72, unknown 364.2
2296 Male, age 66, both hemispheres 361.4
2069 Male, age 47, both hemispheres 338.0
1877 Male, age 55, unknown 285.7
2721 Male, age 90, both hemispheres 235.3
2297 Male, age 75, both hemispheres 205.2
Cervical spinal cord, ventral horn
nTPM: 344.2
2809 Male, age 90, both hemispheres 418.4
2480 Male, age 75, both hemispheres 416.7
2098 Female, age 72, unknown 404.7
2295 Male, age 66, both hemispheres 302.3
2068 Male, age 55, unknown 290.1
2820 Female, age 79, both hemispheres 232.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 347.1
Samples: 159

Max nTPM: 690.3
Min nTPM: 184.7
Std nTPM: 85.2
Median nTPM: 340.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 690.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 624.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 609.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 552.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 550.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 545.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 538.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 527.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 518.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 513.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 487.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 475.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 458.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 453.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 453.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 451.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 451.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 445.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 443.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 435.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 435.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 431.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 425.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 425.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 420.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 418.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 413.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 413.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 408.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 407.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 400.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 400.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 399.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 398.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 398.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 393.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 392.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 392.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 392.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 390.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 389.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 385.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 382.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 381.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 379.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 379.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 379.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 375.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 373.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 373.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 370.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 369.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 369.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 366.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 365.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 363.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 361.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 360.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 360.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 360.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 359.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 358.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 357.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 355.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 354.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 351.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 350.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 348.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 347.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 347.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 345.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 344.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 343.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 343.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 342.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 342.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 341.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 341.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 340.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 340.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 338.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 335.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 334.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 333.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 333.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 332.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 331.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 331.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 330.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 329.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 326.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 324.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 323.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 322.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 321.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 321.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 321.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 317.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 315.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 314.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 311.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 310.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 310.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 308.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 307.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 305.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 304.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 302.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 302.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 300.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 299.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 298.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 298.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 297.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 296.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 295.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 295.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 294.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 290.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 290.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 287.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 286.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 283.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 282.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 281.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 281.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 278.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 276.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 275.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 274.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 273.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 271.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 271.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 271.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 270.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 265.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 264.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 263.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 260.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 255.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 254.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 251.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 251.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 246.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 246.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 245.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 243.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 239.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 237.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 235.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 230.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 227.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 227.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 225.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 220.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 212.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 201.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 190.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 184.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

750.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 750.2
FF:10181-103D1 60 years, female 844.3
FF:10159-103A6 76 years, female 656.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 271.2
Samples: 4

Max nTPM: 419.7
Min nTPM: 180.4
Sample A Female 180.4
Sample B Female 272.2
Sample C Male 419.7
Sample D Male 212.3
Ventral spinal cord
nTPM: 225.0
Samples: 4

Max nTPM: 266.1
Min nTPM: 175.8
Sample A Female 175.8
Sample B Female 240.7
Sample C Male 266.1
Sample D Male 217.3

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