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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:2812.9 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:1115.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB033806
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2812.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2812.9
Samples: 246

Max nTPM: 6384.6
Min nTPM: 1565.6
Std nTPM: 812.2
Median nTPM: 2673.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 6384.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 6286.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 5919.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 5796.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 5676.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 5154.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 5062.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 4795.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4740.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 4657.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4619.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4582.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4547.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 4215.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 4138.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 3984.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 3886.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 3866.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3852.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 3852.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3849.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3840.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3801.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 3797.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3783.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 3766.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3720.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 3696.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3686.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 3661.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 3640.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 3628.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 3617.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3610.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3603.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3589.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3542.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 3500.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3491.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 3487.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 3486.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3462.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 3449.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3416.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3410.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3367.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3301.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3288.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 3270.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3264.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 3259.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 3236.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3230.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 3222.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 3184.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 3182.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 3178.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 3176.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 3166.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 3163.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3155.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3134.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 3127.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 3097.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 3078.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 3074.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 3050.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 3047.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 3046.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 3042.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 3031.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 3016.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 3009.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2999.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2983.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2967.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 2966.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2959.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2940.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 2932.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2932.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 2924.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 2910.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2899.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2893.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2892.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2877.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2871.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2865.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 2860.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2856.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2843.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2839.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2835.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 2816.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 2795.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 2792.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 2791.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2787.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2787.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2780.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2779.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2775.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2773.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2764.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2759.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2745.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2739.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2736.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2730.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2719.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2717.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2717.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2715.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2710.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2709.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2703.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2702.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2702.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2699.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2687.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2674.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2674.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2672.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2661.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2655.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2638.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2630.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2629.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2624.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2623.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2620.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2618.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2617.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 2602.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2600.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 2591.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2587.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 2576.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2569.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2565.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2563.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2562.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 2562.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2554.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2550.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2532.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2516.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2508.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2507.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2503.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2503.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 2501.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2495.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2492.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2488.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2478.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2464.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2461.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 2461.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2453.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 2444.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2426.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2425.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2418.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2409.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2408.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2401.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2401.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2398.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 2397.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2396.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2384.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2367.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2364.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2362.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2355.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2351.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2346.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2342.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2324.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 2324.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2309.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2291.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2289.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2285.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 2284.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2262.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2252.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2251.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2247.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 2247.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2245.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2236.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2230.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2206.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2183.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 2182.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2170.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2157.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2154.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2148.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2137.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2137.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 2124.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 2115.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2114.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2107.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2105.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2080.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 2060.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2052.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2049.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 2043.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2036.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 2030.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 2027.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2014.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1999.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1998.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1977.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1967.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1962.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1960.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1954.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1953.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1902.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1887.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1886.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1885.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1877.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1866.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1859.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1853.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1846.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1825.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1802.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1783.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1766.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1697.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1695.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1651.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1650.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1647.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1575.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1565.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.0
FF:10164-103B2 76 years, female 19.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1115.7
Pig sample Sample description nTPM
Caudate
nTPM: 1115.7
Samples: 4

Max nTPM: 1256.5
Min nTPM: 912.9
Sample A Female 1256.5
Sample B Female 1229.1
Sample C Male 1064.3
Sample D Male 912.9

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