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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:10067.9 nTPM
HPA Brain:3609.6 nTPM
GTEx:10067.9 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:3265.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3609.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2606.1
1981 Female, age 72, midline 3442.1
2565 Male, age 75, midline 2618.2
2816 Male, age 47, midline 2579.6
2048 Male, age 55, midline 2214.0
2194 Female, age 79, both hemispheres 2176.5
Cervical spinal cord, dorsal horn
nTPM: 2529.6
2173 Female, age 72, unknown 4092.4
2296 Male, age 66, both hemispheres 3380.8
2069 Male, age 47, both hemispheres 2585.6
1877 Male, age 55, unknown 2077.9
2297 Male, age 75, both hemispheres 1617.8
2721 Male, age 90, both hemispheres 1422.9
Cervical spinal cord, ventral horn
nTPM: 3609.6
2480 Male, age 75, both hemispheres 4925.9
2809 Male, age 90, both hemispheres 4590.6
2098 Female, age 72, unknown 4574.5
2295 Male, age 66, both hemispheres 3022.6
2068 Male, age 55, unknown 2297.1
2820 Female, age 79, both hemispheres 2247.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10067.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 10067.9
Samples: 159

Max nTPM: 22474.2
Min nTPM: 2874.4
Std nTPM: 4062.4
Median nTPM: 8989.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 22474.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 22404.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 21322.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 20830.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 20469.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 19664.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 19661.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 18898.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 18719.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 17840.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 17475.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 17404.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 17155.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 16906.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 16622.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 15623.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 15529.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15044.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 15005.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 14595.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 14545.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 14069.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 13939.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 13921.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 13621.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 13494.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 13312.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 13236.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 13198.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 13176.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 12962.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 12801.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 12691.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 12675.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 12674.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 12648.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 12382.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 12357.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 12333.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 12311.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 12309.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 12098.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 11913.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 11877.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 11779.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 11769.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 11729.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 11717.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 11637.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 11464.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 11381.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 11344.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 11233.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 11147.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 11103.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 11005.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 10977.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 10955.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 10934.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10902.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 10833.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 10745.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 10723.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 10623.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 10368.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 10358.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 10316.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 10204.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 10148.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 10100.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 10007.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 9744.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 9699.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 9660.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 9350.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 9150.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 9143.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 9115.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 9041.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 8989.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 8878.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 8816.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 8809.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 8771.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 8767.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 8627.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 8534.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 8453.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 8421.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 8394.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 8373.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 8365.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 8329.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 8313.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 8296.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 8230.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 8166.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 8152.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 8137.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 8007.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 7993.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 7938.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 7885.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7880.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 7798.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 7789.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 7781.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 7772.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 7691.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 7629.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 7583.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 7580.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 7541.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 7539.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 7499.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 7488.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 7481.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 7479.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 7460.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 7421.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 7342.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 7310.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 7120.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 7027.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6988.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 6941.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 6934.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 6919.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 6885.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6845.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 6654.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 6573.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6552.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 6540.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6424.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6399.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 6322.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 6311.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 6221.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 6155.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 6097.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 6051.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 5879.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 5583.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 5556.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 5410.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 5342.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 5123.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 5104.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 5048.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 4915.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4738.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 4290.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 4196.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 3969.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 3495.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 3495.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 3462.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 2874.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 47.2
FF:10181-103D1 60 years, female 60.0
FF:10159-103A6 76 years, female 34.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3265.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2882.3
Samples: 4

Max nTPM: 3623.9
Min nTPM: 2220.2
Sample A Female 2220.2
Sample B Female 3623.9
Sample C Male 3435.9
Sample D Male 2249.2
Ventral spinal cord
nTPM: 3265.4
Samples: 4

Max nTPM: 4036.6
Min nTPM: 2611.1
Sample A Female 2611.1
Sample B Female 4036.6
Sample C Male 2922.1
Sample D Male 3491.6

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