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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2813.6 nTPM
GTEx:2813.6 nTPM
FANTOM5:22.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB033806
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2813.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2813.6
Samples: 156

Max nTPM: 5722.6
Min nTPM: 1274.3
Std nTPM: 1072.6
Median nTPM: 2420.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 5722.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 5571.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 5419.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 5362.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 5343.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 5304.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 5080.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 5005.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4934.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 4898.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 4768.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 4626.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 4527.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 4446.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 4385.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 4263.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 4259.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 4255.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 4203.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 4166.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 4136.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4112.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 4074.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 4067.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 4020.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 3992.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 3945.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3918.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 3898.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 3891.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 3865.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3857.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 3851.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 3811.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 3791.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3781.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 3712.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 3690.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3684.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 3666.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 3660.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3604.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 3505.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 3481.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3418.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3393.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 3336.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 3297.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3271.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 3243.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 3218.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3213.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 3174.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 3026.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 3020.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2963.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2955.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2901.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2895.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2872.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2872.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2841.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2803.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2783.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2723.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2723.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2708.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2700.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2690.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2653.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2637.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2617.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2593.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2592.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2536.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2478.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2436.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 2421.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2419.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2408.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2371.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2369.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2365.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2361.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2345.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2338.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2331.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2299.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2285.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 2277.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 2255.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2238.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2221.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2217.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2211.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2196.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2195.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2183.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2177.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2175.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2175.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2172.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2167.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2154.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2134.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2127.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2124.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2121.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2120.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2119.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 2078.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2074.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2057.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2056.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2055.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2026.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2020.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2012.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1986.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1979.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1957.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1956.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1941.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1937.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1910.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1881.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1874.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1866.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1857.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1806.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1806.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1804.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1792.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1756.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1743.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1710.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1709.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1699.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1687.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1685.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 1644.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1610.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1599.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1591.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1588.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1544.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1534.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1523.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1514.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1500.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1483.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1444.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1419.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1400.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1274.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1274.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 22.1
FF:10204-103F6 68 years, female 22.1

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