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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1364.6 nTPM
GTEx:4121.7 nTPM
FANTOM5:29.0 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB033806
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1364.6
Sample id Sample description nTPM
Hippocampus
nTPM: 1364.6
1898 Male, age 80, left hemisphere 1809.8
1855 Male, age 76, left hemisphere 1779.2
2621 Female, age 67, right hemisphere 1325.6
1911 Female, age 85, right hemisphere 1259.2
2529 Female, age 94, left hemisphere 1226.2
2148 Female, age 91, left hemisphere 787.5

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4121.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4121.7
Samples: 197

Max nTPM: 9114.6
Min nTPM: 1657.5
Std nTPM: 1303.0
Median nTPM: 3991.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 9114.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 9009.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 8184.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 7249.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 7104.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 7034.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 7032.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 6880.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 6849.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 6523.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 6386.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 6073.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 6046.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 5997.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 5989.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 5969.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 5939.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 5936.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 5933.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 5920.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 5902.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 5902.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 5887.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 5846.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 5817.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 5737.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 5707.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 5598.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 5459.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 5342.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 5335.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 5109.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 5102.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 5079.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 5063.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 5050.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 5043.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 5008.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 4987.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 4927.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 4919.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 4896.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 4895.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 4823.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 4818.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 4809.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 4804.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 4792.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 4782.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 4778.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 4774.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 4743.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 4690.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 4687.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 4669.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 4654.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 4632.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 4626.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 4620.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 4584.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 4571.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 4560.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 4517.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 4497.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 4493.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 4481.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 4462.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 4445.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 4444.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 4417.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 4416.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 4408.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 4408.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 4406.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 4391.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 4372.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 4369.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 4366.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 4364.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 4361.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 4311.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 4305.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 4281.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 4281.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 4265.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 4240.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 4236.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 4223.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 4222.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 4219.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 4217.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 4182.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 4139.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 4136.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 4120.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 4087.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 4087.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 4062.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 3991.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 3990.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 3978.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 3958.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 3936.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 3926.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 3901.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 3847.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 3842.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 3837.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 3776.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 3775.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 3772.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 3749.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 3744.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 3743.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 3741.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 3741.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 3734.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 3657.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 3657.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 3656.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 3651.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 3644.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 3603.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 3597.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 3591.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 3576.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 3561.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 3555.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3540.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 3532.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 3530.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 3494.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 3477.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 3412.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 3399.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 3385.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 3384.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 3369.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 3346.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 3344.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 3319.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 3314.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 3297.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 3295.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 3279.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 3270.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 3254.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 3252.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 3225.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 3221.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 3172.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 3149.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 3143.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 3101.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 3092.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 3080.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 3079.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 3028.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 2984.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 2976.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 2957.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 2924.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 2907.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 2867.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 2866.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 2856.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 2853.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 2780.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 2766.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 2743.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 2729.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 2711.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 2695.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 2655.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 2617.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 2569.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 2539.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 2537.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 2534.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 2492.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 2484.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 2458.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 2455.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 2444.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 2425.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 2340.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 2304.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 2249.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 2246.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 2245.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 2231.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 2134.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2009.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 1958.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 1948.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1817.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1657.5
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.0
FF:10169-103B7 60 years, female 41.5
FF:10153-102I9 76 years, female 16.6

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