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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2402.2 nTPM
HPA Brain:282.4 nTPM
GTEx:2402.2 nTPM
FANTOM5:96.9 Scaled Tags Per Million
Mouse:1708.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.4
Sample id Sample description nTPM
Amygdala
nTPM: 282.4
2695 Female, age 67, right hemisphere 356.7
2514 Male, age 75, right hemisphere 295.9
1987 Female, age 91, left hemisphere 282.4
2517 Female, age 94, left hemisphere 241.8
2814 Male, age 76, right hemisphere 234.9
Basal amygdala
nTPM: 212.3
2827 Female, age 67, right hemisphere 302.3
2110 Male, age 80, left hemisphere 234.1
2685 Female, age 94, left hemisphere 226.7
2609 Male, age 75, right hemisphere 207.3
1955 Male, age 76, both hemispheres 165.7
2243 Female, age 91, right hemisphere 137.6
Central amygdala
nTPM: 242.2
2826 Female, age 94, left hemisphere 353.1
2515 Male, age 75, right hemisphere 312.2
1905 Male, age 76, both hemispheres 246.1
2239 Male, age 80, left hemisphere 167.7
2701 Female, age 91, right hemisphere 131.7
Corticomedial amygdala
nTPM: 180.5
2428 Male, age 75, right hemisphere 225.4
2429 Female, age 94, left hemisphere 196.9
2829 Male, age 80, left hemisphere 194.4
2535 Female, age 67, right hemisphere 176.8
2240 Male, age 76, both hemispheres 149.4
2242 Female, age 91, right hemisphere 139.9
Lateral amygdala
nTPM: 268.7
2830 Female, age 67, right hemisphere 373.8
2516 Male, age 75, right hemisphere 370.5
2534 Female, age 94, left hemisphere 329.6
1883 Male, age 76, both hemispheres 192.1
2256 Male, age 80, left hemisphere 191.7
2255 Female, age 91, right hemisphere 154.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2402.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2402.2
Samples: 152

Max nTPM: 9007.7
Min nTPM: 985.0
Std nTPM: 1276.0
Median nTPM: 2075.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 9007.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 7944.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6875.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 6549.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5850.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5016.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 4952.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4759.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 4634.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4435.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 4387.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 4238.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4235.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4174.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 4000.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3952.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3839.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3795.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3791.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3766.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 3514.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3514.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3273.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3258.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3242.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 3214.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3196.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3147.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 3144.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 3052.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2993.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2976.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2972.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2937.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2915.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2863.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2807.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2800.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2799.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2683.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2671.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2665.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2653.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2633.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2506.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2484.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2479.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2477.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2463.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2446.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2427.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2413.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2408.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2401.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2370.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2353.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2329.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2321.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2318.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2296.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2294.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2275.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2270.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2254.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2231.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2197.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2191.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2184.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2183.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2180.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2176.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2164.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2159.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2145.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2142.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2079.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2072.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2030.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2025.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2025.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1998.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1950.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1930.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1928.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1923.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1913.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1904.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1900.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1889.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1883.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1883.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1876.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1827.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1820.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1790.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1788.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1774.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1771.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1737.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1731.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1705.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1698.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1692.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1689.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1679.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1670.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1661.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1661.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1656.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1652.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1648.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1629.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1623.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1620.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1617.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1603.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1572.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1562.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1552.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1550.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1520.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1519.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1498.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1468.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1433.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1430.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1408.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1405.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1391.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1390.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1379.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1372.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1356.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1347.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1344.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1324.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1319.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1288.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1265.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1262.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1236.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1235.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1223.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1201.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1171.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1140.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1116.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1104.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1062.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1027.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1014.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 985.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.9
FF:10151-102I7 76 years, female 96.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1708.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 1708.2
Samples: 4

Max nTPM: 1937.9
Min nTPM: 1569.0
Sample A Male 1649.8
Sample B Male 1675.9
Sample C Female 1937.9
Sample D Female 1569.0

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