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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2037.8 nTPM
HPA Brain:462.8 nTPM
GTEx:2037.8 nTPM
FANTOM5:127.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

462.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 286.5
1981 Female, age 72, midline 424.7
2565 Male, age 75, midline 350.0
2048 Male, age 55, midline 264.1
2816 Male, age 47, midline 213.5
2194 Female, age 79, both hemispheres 180.3
Cervical spinal cord, dorsal horn
nTPM: 349.5
2173 Female, age 72, unknown 470.9
2069 Male, age 47, both hemispheres 469.0
2296 Male, age 66, both hemispheres 397.9
1877 Male, age 55, unknown 375.9
2297 Male, age 75, both hemispheres 205.7
2721 Male, age 90, both hemispheres 177.5
Cervical spinal cord, ventral horn
nTPM: 462.8
2480 Male, age 75, both hemispheres 731.8
2098 Female, age 72, unknown 601.5
2809 Male, age 90, both hemispheres 558.1
2068 Male, age 55, unknown 457.9
2295 Male, age 66, both hemispheres 284.6
2820 Female, age 79, both hemispheres 142.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2037.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 2037.8
Samples: 159

Max nTPM: 3988.0
Min nTPM: 801.0
Std nTPM: 738.9
Median nTPM: 1869.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3988.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 3982.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3961.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3755.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3738.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3726.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3684.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3517.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3509.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 3452.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3423.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3404.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 3314.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 3279.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3199.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 3185.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 3147.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3131.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3125.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3080.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3017.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2966.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2929.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2922.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2909.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2829.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2804.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2800.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2765.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2721.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2698.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2681.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2643.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2632.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2615.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2588.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2547.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2540.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2536.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2504.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2486.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2441.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2433.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2384.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2368.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2355.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2351.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2306.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2275.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2235.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2227.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2202.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2179.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2168.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 2108.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2104.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2089.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2077.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2077.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2074.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2067.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2067.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2038.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2020.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2016.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2015.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1954.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1948.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1948.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1945.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1942.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1926.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1924.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1911.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1907.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1905.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1880.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1873.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1870.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1869.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1864.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1846.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1845.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1841.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1833.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1829.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1829.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1827.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1811.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1807.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1802.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1790.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1784.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1779.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1778.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1777.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1775.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1768.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1732.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1717.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1715.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1706.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1685.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1660.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1651.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1630.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1630.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1626.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1608.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1605.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1588.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1573.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1566.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1542.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1529.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1527.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1524.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1511.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1482.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1474.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1470.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1460.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1440.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1406.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1405.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1382.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1373.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1373.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1371.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1348.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1342.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1328.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1322.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1322.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1305.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1301.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1290.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1287.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1261.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1230.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1223.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1221.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1209.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1197.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1195.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1195.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1182.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1182.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1173.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1141.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1139.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1098.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1094.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1069.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1018.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1017.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 861.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 827.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 801.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

127.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 127.6
FF:10181-103D1 60 years, female 183.0
FF:10159-103A6 76 years, female 72.1

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