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RPS29
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3182.0 nTPM
HPA:1345.0 nTPM
GTEx:3182.0 nTPM
FANTOM5:85.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004107
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1345.0
overview
Male, age 65
Small intestine sample 232
nTPM: 1711.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1209.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1263.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1195.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3182.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 3182.0
Samples: 187

Max nTPM: 9529.3
Min nTPM: 1409.2
Std nTPM: 1201.7
Median nTPM: 2913.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9529.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 6898.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6775.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 6236.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6162.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 6138.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 5992.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5537.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 5525.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 5463.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 5441.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 5176.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 5159.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 5142.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 5062.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 4880.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4851.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4806.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 4704.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 4665.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 4637.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4623.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 4506.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 4492.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 4465.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 4420.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 4331.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 4293.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4268.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 4252.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 4173.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 4159.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 4127.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4111.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 4100.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 4096.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 4026.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 3983.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 3980.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3978.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3940.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3937.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3925.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 3918.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3909.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3905.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3895.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3879.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 3853.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3824.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3813.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3751.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3702.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3687.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3653.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3521.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3486.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3485.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 3483.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3467.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3451.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3442.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 3414.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3349.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3344.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3341.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3339.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3323.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 3316.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3311.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3305.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 3304.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3299.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3294.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 3288.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3270.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3261.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3252.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3160.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3156.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3139.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3118.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 3096.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3078.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3063.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3061.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 3056.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3052.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3012.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2977.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2966.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2947.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2917.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2913.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2911.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2842.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2835.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2832.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2826.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2823.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2808.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2801.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2787.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2754.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2720.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2693.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2675.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2666.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2659.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2640.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2627.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2594.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2594.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2592.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2566.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2564.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2552.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2547.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2540.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2540.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 2518.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2495.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2478.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2474.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2445.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2438.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2407.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2406.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2405.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2405.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2404.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2398.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2397.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2396.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2356.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2346.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2341.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2334.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2320.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2316.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2315.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2314.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2308.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2285.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2270.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2254.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2237.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 2231.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2217.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2213.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2212.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2204.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2183.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2183.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2172.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2167.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2150.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2142.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2129.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2121.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2109.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2094.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2092.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2087.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2082.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2063.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2063.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2045.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2036.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2027.9
GTEX-1192X-2526-SM-59868 50-59 years, male 2000.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1954.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1932.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1901.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1839.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1783.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1724.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1687.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1663.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1635.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1633.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1629.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1626.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1578.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1553.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1533.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1409.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 85.0
FF:10024-101D6 15,40,85 years, mixed 85.0

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